View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7962_low_9 (Length: 486)
Name: NF7962_low_9
Description: NF7962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7962_low_9 |
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| [»] scaffold0066 (3 HSPs) |
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Alignment Details
Target: scaffold0066 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 12 - 356
Target Start/End: Original strand, 33495 - 33826
Alignment:
| Q |
12 |
agattatactgacattgaaaggaaggtgtaagatgggaaaat--gaaaagaagtaatagaattgtccaaattctgatactctttgggttttggggagcca |
109 |
Q |
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| T |
33495 |
agattagactgacattgaaagggaggtgaaaggtgggaaaatatgaaaagaagtcatagaattgtccaaattctgatactctttgggttttggggagcca |
33594 |
T |
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| Q |
110 |
ttgaaggctgaggtgcatgccgtgatgtctaaaagtctccgaatatgcgtcacagccacctcttccgtgtcatactcctctgaaaaat---aacaatatt |
206 |
Q |
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| T |
33595 |
ttgaaggctgaggtgcatgccgtgatgtctaaaagtctccgaatatgcgtcacagcca------------------cctctgaaaaataacaacaatatt |
33676 |
T |
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| Q |
207 |
gttagtgatcatgtgtgtgtaattgtatacaaaagactatgttgaatggagttagtttaccttgcacaattgaaacatgacatggtttcagtgatacgag |
306 |
Q |
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| T |
33677 |
gttagtgatcatatgtgtgtaattgtatacaaaagactaagttgaatggagttagtttaccttgcacaattgaaacgtgacatggtttcagtgatacgat |
33776 |
T |
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| Q |
307 |
ttccatattatctttcagcctcacaccttgaacctgtgttcaattctctc |
356 |
Q |
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| T |
33777 |
ttccacgttatctttcagcctcacacctcgaacctgtgttcaattttctc |
33826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0066; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 90 - 380
Target Start/End: Original strand, 31218 - 31522
Alignment:
| Q |
90 |
ctttgggttttggggagccattgaaggctgaggtgcatgccgtgatgtctaaaagtctccgaatatgcgtcacagccacctcttccgtgtcatactcctc |
189 |
Q |
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| T |
31218 |
ctttgggttttggggagccattgaaggttgaggtgcatgccgtgatgtctaaaagtctccgaatatgcgtcaccgccacctcttccgtgttgtactcctc |
31317 |
T |
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| Q |
190 |
tgaaaaat---aacaatattgttagtgatcatgtgtgtgtaattgtatacaaaagactatgttgaatggagttagt-----------ttaccttgcacaa |
275 |
Q |
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| T |
31318 |
tgaaaaataacaacaatattgttagtgatcatatgtatgtaattgtatacacaagactaagttgaattaagttagttggttagttagttaccttgcacga |
31417 |
T |
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| Q |
276 |
ttgaaacatgacatggtttcagtgatacgagttccatattatctttcagcctcacaccttgaacctgtgttcaattctctcgatttcagttcaactaaaa |
375 |
Q |
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| T |
31418 |
ttgaaacatgacatggtttcagtgatacgatttccacgttatctttcagcctctcacctcgaacctgtgttcaattctctcaatttcagttcaactaaaa |
31517 |
T |
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| Q |
376 |
taaca |
380 |
Q |
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| T |
31518 |
taaca |
31522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0066; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 31091 - 31157
Alignment:
| Q |
12 |
agattatactgacattgaaaggaaggtgtaagatgggaaaatgaaaagaagtaatagaattgtccaa |
78 |
Q |
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| T |
31091 |
agattagactgacattgaaagggaggtgtaaggtgggaaaatgaaaagaagtcatagaattgtccaa |
31157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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