View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7963_high_13 (Length: 337)

Name: NF7963_high_13
Description: NF7963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7963_high_13
NF7963_high_13
[»] chr3 (23 HSPs)
chr3 (18-288)||(47414106-47414376)
chr3 (18-306)||(5160199-5160486)
chr3 (18-306)||(46483972-46484260)
chr3 (18-240)||(45883646-45883870)
chr3 (18-306)||(5156169-5156457)
chr3 (18-300)||(46479720-46480002)
chr3 (18-306)||(46473853-46474141)
chr3 (18-311)||(46526338-46526630)
chr3 (84-306)||(51943814-51944036)
chr3 (18-313)||(45902871-45903167)
chr3 (18-306)||(46497869-46498160)
chr3 (75-306)||(46490633-46490864)
chr3 (18-306)||(16025405-16025696)
chr3 (122-307)||(46549004-46549189)
chr3 (90-238)||(46236782-46236930)
chr3 (75-224)||(47397278-47397427)
chr3 (104-305)||(46531844-46532045)
chr3 (257-306)||(46538909-46538958)
chr3 (198-305)||(4613932-4614039)
chr3 (196-306)||(46554278-46554388)
chr3 (29-58)||(46539169-46539198)
chr3 (257-306)||(46544381-46544430)
chr3 (94-171)||(46554173-46554250)
[»] chr4 (3 HSPs)
chr4 (75-337)||(35155309-35155573)
chr4 (101-313)||(35162356-35162567)
chr4 (36-306)||(15555936-15556206)
[»] chr8 (2 HSPs)
chr8 (75-308)||(9692688-9692921)
chr8 (75-311)||(9675666-9675902)
[»] chr2 (3 HSPs)
chr2 (76-304)||(20359053-20359281)
chr2 (86-304)||(20144543-20144761)
chr2 (76-304)||(20169003-20169231)
[»] chr7 (2 HSPs)
chr7 (92-306)||(17735851-17736065)
chr7 (92-172)||(17745165-17745245)


Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 47414106 - 47414376
Alignment:
Q  18 caaatgaaaccttgaatcttggaattctgaagtcacctacttcgactttagaaagatgaagcttgtggtgtagtaactcagattcagaagccaccttctc 117  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47414106 caaatgaaaccttgaatcttggaattctgaagtcacctactttgactttagaaagatgaagcttgtggtgtagtaactcagattcagaagccaccttctc 47414205  T
Q  118 aaccaaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaatttccgcgtatcttctcctttgttataaggaagacaaagaacttta 217  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  47414206 aaccaaagctgacagtccatctcttgtgtttggaagaaaaatgtacatagagaatttccgcgtatcttctcctttattataaggaaggcaaagaacttta 47414305  T
Q  218 aaatcatcaaaagctccaataaactgcttctctccattggtcatgaagggaaccttgactgagctgccatt 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  47414306 aaatcatcaaaagctccaataaactgcttctctccattggtcatgaagggaaccttgactgagcttccatt 47414376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 5160486 - 5160199
Alignment:
Q  18 caaatgaaaccttgaatcttggaattctgaagtcacctacttcgactttagaaagatgaagcttgtggtgtagtaactcagattcagaagccaccttctc 117  Q
    |||||||||  |||||||||||||||||||| |||||||||||  ||| || |||||||| | ||||||||||||||||||||||||||||||||||||     
T  5160486 caaatgaaattttgaatcttggaattctgaattcacctacttcttcttcaggaagatgaaacctgtggtgtagtaactcagattcagaagccaccttctt 5160387  T
Q  118 aaccaaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaatttccgcgtatcttctcctttgttataaggaagacaaagaacttta 217  Q
    ||||||||  ||||  |||||| |||| |||||||| ||||||||||||||||||   ||| ||||||  ||||| ||||| ||||||| ||||||||||    
T  5160386 aaccaaagtcgacaagccatcttttgcatttggaaggaaaatgtacatagagaatggacgcttatctttgcctttcttatacggaagacgaagaacttta 5160287  T
Q  218 aaatcatcaaaagctccaataaactgcttctctccattggtcatgaagggaaccttgactgagctgccattcagaaggtgaaaatcata 306  Q
    || || ||| ||||| |||||||||| |||||  |  |||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  5160286 aagtcgtcataagcttcaataaactgattctcctcgctggtcatgaagggaaccttgactgagct-ccattcaaaaggtgaaaatcata 5160199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 46484260 - 46483972
Alignment:
Q  18 caaatgaaaccttgaatcttggaattctgaagtcacctacttcgactttagaaagatgaagcttgtggtgtagtaactcagattcagaagccaccttctc 117  Q
    |||||||||  |||||  ||||||| || |||||||||||||| ||||||  || | |||||||||| |||||||| ||| |||||||||||||||| ||    
T  46484260 caaatgaaatattgaactttggaatcctaaagtcacctacttccactttatcaaaaggaagcttgtgttgtagtaaatcaaattcagaagccaccttttc 46484161  T
Q  118 aaccaaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaatttccgcgtatcttctcctttgttataaggaagacaaagaacttta 217  Q
    |||||||  ||  || |||||| |||| ||||||||||||| |||||||| |||    ||| ||||||| ||||  ||||||||||||| ||||||||||    
T  46484160 aaccaaacttggaagcccatcttttgcatttggaagaaaaaagtacatagtgaaacgacgcttatcttcgccttgcttataaggaagaccaagaacttta 46484061  T
Q  218 aaatcatcaaaagctccaataaactgcttctctccattggtcatgaagggaaccttgactgagctgccattcagaaggtgaaaatcata 306  Q
    ||| |||||||||||| ||||||||||||||      | ||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  46484060 aaaccatcaaaagctctaataaactgcttcttcttgctagtcataaagggaaccttgactgagctgccattgagaaggtgaaaatcata 46483972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 45883646 - 45883870
Alignment:
Q  18 caaatgaaaccttgaatcttggaattctgaagtcacctacttcgactttagaaagatgaagctt--gtggtgtagtaactcagattcagaagccaccttc 115  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||  ||||||  ||||||||||||   |||||||||||||||||||    
T  45883646 caaatgaaacattgaatcttggaattctgaagtcacctactttgactttagaatgacaaagcttttgtggtgtagtaatgtagattcagaagccaccttc 45883745  T
Q  116 tcaaccaaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaatttccgcgtatcttctcctttgttataaggaagacaaagaactt 215  Q
    || ||||||||||||||||||||| |||| ||||||||||||| |||||||||||||   ||| ||||| | ||||  | |||||| | |||||| ||||    
T  45883746 tcgaccaaagctgacagtccatcttttgcatttggaagaaaaaagtacatagagaatcgacgcttatctccaccttgctcataagggatacaaagcactt 45883845  T
Q  216 taaaatcatcaaaagctccaataaa 240  Q
    ||||| |||||||||||| ||||||    
T  45883846 taaaaccatcaaaagctctaataaa 45883870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 5156457 - 5156169
Alignment:
Q  18 caaatgaaaccttgaatcttggaattctgaagtcacctacttcgactttagaaagatgaagcttgtggtgtagtaactcagattcagaagccaccttctc 117  Q
    |||||||||  |||||||||||||||||||| ||| |||||||  ||| || | |||||||  | | ||||||||| | || || || ||||| ||||||    
T  5156457 caaatgaaattttgaatcttggaattctgaattcaactacttctgcttcagcaggatgaagactatagtgtagtaagtgaggtttagcagccaacttctc 5156358  T
Q  118 aaccaaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaatttccgcgtatcttctcctttgttataaggaagacaaagaacttta 217  Q
    |||||| |||| |||||||||| | || |||||||||||||||||||||||||||   ||| ||||||  ||||| ||||| ||||||| ||||||||||    
T  5156357 aaccaatgctggcagtccatctttagcatttggaagaaaaatgtacatagagaatcgacgcttatctttgccttttttatacggaagacgaagaacttta 5156258  T
Q  218 aaatcatcaaaagctccaataaactgcttctctccattggtcatgaagggaaccttgactgagctgccattcagaaggtgaaaatcata 306  Q
    ||  || || ||||| |||||||||| |||||  |  |||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  5156257 aagccaccataagcttcaataaactgattctcctcgctggtcatgaagggaaccttgaccgagctgccattcaaaaggtgaaaatcata 5156169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 46480002 - 46479720
Alignment:
Q  18 caaatgaaaccttgaatcttggaattctgaagtcacctacttcgactttagaaagatgaagcttgtggtgtagtaactcagattcagaagccaccttctc 117  Q
    |||||||||  |||||  ||||||| || |||||||||||||| ||||||  ||   |||||||||| || |||| ||||||||||||||||||||| ||    
T  46480002 caaatgaaatattgaactttggaatcctaaagtcacctacttccactttaccaaatggaagcttgtgttgcagtagctcagattcagaagccaccttttc 46479903  T
Q  118 aaccaaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaatttccgcgtatcttctcctttgttataaggaagacaaagaacttta 217  Q
     |||||||||| ||  |||||| |||| ||||||||||||| |||||| | |||||  ||| ||||||| ||||  |||||||||||||  |||||||||    
T  46479902 gaccaaagctgccaacccatcttttgcatttggaagaaaaaagtacatggtgaattgacgcttatcttcgccttgcttataaggaagaccgagaacttta 46479803  T
Q  218 aaatcatcaaaagctccaataaactgcttctctccattggtcatgaagggaaccttgactgagctgccattcagaaggtgaaa 300  Q
    ||| |||||||||||| ||||||||||||||      |||||||||||||||||||||||| ||| ||||||| |||||||||    
T  46479802 aaaccatcaaaagctctaataaactgcttcttcttgctggtcatgaagggaaccttgactgggctaccattcaaaaggtgaaa 46479720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 46474141 - 46473853
Alignment:
Q  18 caaatgaaaccttgaatcttggaattctgaagtcacctacttcgactttagaaagatgaagcttgtggtgtagtaactcagattcagaagccaccttctc 117  Q
    |||||||||  |||||  ||||||| || |||||||||||||| ||||||  || | |||||||||| |||||||| |||||||||||||||||||| ||    
T  46474141 caaatgaaatattgaactttggaatcctaaagtcacctacttccactttatcaaaaggaagcttgtgttgtagtaaatcagattcagaagccaccttttc 46474042  T
Q  118 aaccaaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaatttccgcgtatcttctcctttgttataaggaagacaaagaacttta 217  Q
    |||||||  ||  || |||||| |||| ||||||||||||| |||||||| |||    ||| ||||||| ||||  ||||||||||||| ||||||||||    
T  46474041 aaccaaacttggaagcccatcttttgcatttggaagaaaaaagtacatagtgaaacgacgcttatcttcgccttgcttataaggaagaccaagaacttta 46473942  T
Q  218 aaatcatcaaaagctccaataaactgcttctctccattggtcatgaagggaaccttgactgagctgccattcagaaggtgaaaatcata 306  Q
    ||| |||||||||||| ||||||||||||||      | ||||| |||| |||||| |||||||||||||| ||||||| |||||||||    
T  46473941 aaaccatcaaaagctctaataaactgcttcttcttgctagtcataaaggaaaccttaactgagctgccattgagaaggtaaaaatcata 46473853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 46526338 - 46526630
Alignment:
Q  18 caaatgaaaccttgaatcttggaattctgaagtcacctacttcgactttagaaagatgaagcttgtggtgtagtaactcagattcagaagccaccttctc 117  Q
    |||||||||  |||||| ||||||||||||| ||||||||||| ||||| |  | | |||| ||||||||||||||||||| ||||||||| ||||||||    
T  46526338 caaatgaaaatttgaattttggaattctgaaatcacctacttcaacttttgtgaaaggaaggttgtggtgtagtaactcaggttcagaagctaccttctc 46526437  T
Q  118 aaccaaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaatttccgcgtatcttctcctttgttataaggaagacaaagaacttta 217  Q
     |  |||| || ||  |||||||||||  |||||||||||||||||||||||||||  ||| ||||||||||||  |||||||||||||  || |||||     
T  46526438 gattaaagttggcaaaccatctcttgctcttggaagaaaaatgtacatagagaattgacgcttatcttctccttgcttataaggaagacggagtactttg 46526537  T
Q  218 aaatcatcaaaagctccaataaactg-cttctctccattggtcatgaagggaaccttgactgagctgccattcagaaggtgaaaatcatattttt 311  Q
    ||| |||| ||| | |  ||||| || ||  ||| |  |||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||    
T  46526538 aaaccatcgaaaacactgataaattgtctattct-cgctggtcatgaagggaaccttgactgagctgccattta-aaggtgaaaatcatagtttt 46526630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 84 - 306
Target Start/End: Complemental strand, 51944036 - 51943814
Alignment:
Q  84 ggtgtagtaactcagattcagaagccaccttctcaaccaaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaatttccgcgtatc 183  Q
    ||||||| |||||||||  ||| | ||| || ||||| ||||||||||  |||||| |||| |||||||||||||  |||||||||||||  ||| ||||    
T  51944036 ggtgtaggaactcagatgtagaggacactttttcaactaaagctgacaacccatcttttgcatttggaagaaaaaaatacatagagaattggcgcttatc 51943937  T
Q  184 ttctcctttgttataaggaagacaaagaactttaaaatcatcaaaagctccaataaactgcttctctccattggtcatgaagggaaccttgactgagctg 283  Q
    ||| ||||| ||||||||||||  ||||||||||||||||||| || || |||||||||||||||      ||||||||||||||||||||||||||||     
T  51943936 ttcacctttcttataaggaagatgaagaactttaaaatcatcataaacttcaataaactgcttcttattgctggtcatgaagggaaccttgactgagcta 51943837  T
Q  284 ccattcagaaggtgaaaatcata 306  Q
    ||||| |||||||||||||||||    
T  51943836 ccatttagaaggtgaaaatcata 51943814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 313
Target Start/End: Complemental strand, 45903167 - 45902871
Alignment:
Q  18 caaatgaaaccttgaatcttggaattctgaagt-cacctacttcgactttagaaagatgaagcttgtggtgtagtaactcagattcagaagccaccttct 116  Q
    |||||||||  |||||| ||||| |||| || | |||| ||||| ||||| | ||  ||||||||||||||||||||||||||||||||||| |||||||    
T  45903167 caaatgaaaatttgaattttggatttctaaaattcaccgacttcaacttttggaatttgaagcttgtggtgtagtaactcagattcagaagctaccttct 45903068  T
Q  117 caaccaaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaatttccgcgtatcttctcctttgttataaggaagacaaagaacttt 216  Q
    |||| |||  |  ||  |||||| |||| |||||||||||||| |||||||||||||  ||| ||||||||||||  | ||||||||||| ||| |||||    
T  45903067 caactaaactttgcaaaccatcttttgcttttggaagaaaaatatacatagagaattgacgcttatcttctccttgctcataaggaagacgaagtacttt 45902968  T
Q  217 aaaatcatcaaaagctccaataaactgcttctctccattggtcatgaagggaaccttgactgagctgccattcagaaggtgaaaatcatatttttgt 313  Q
     ||| |||| ||| | |  ||||||||| |||   |  |||||||||||||||||||||||||||| ||||| ||||||| ||||| ||| ||||||    
T  45902967 gaaaccatcgaaaacgcggataaactgcctcttctcgctggtcatgaagggaaccttgactgagctaccatttagaaggtaaaaattatagttttgt 45902871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 46498160 - 46497869
Alignment:
Q  18 caaatgaaaccttgaatcttggaattctgaagtcacctacttcgactttagaaagatgaagcttgtggtgtagtaactcagattcagaagccaccttctc 117  Q
    |||||||||  ||||| |||||||| || |||||||||||||| |||||   |||| |||||||||| || |||||||||||||| ||||| | ||||||    
T  46498160 caaatgaaatattgaaccttggaatcctaaagtcacctacttccactttgtcaagaggaagcttgtgttgcagtaactcagattcggaagcaagcttctc 46498061  T
Q  118 aaccaaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaatttccgcgtatcttctcctttgttataaggaagacaaagaacttta 217  Q
    || ||||| || ||| |||||| |||| ||||||||||||| |||||| |  ||||  ||| | ||||| ||||  ||||||||||| | ||||||||||    
T  46498060 aagcaaagttggcagcccatcttttgcatttggaagaaaaaagtacatcgtaaattgacgcttgtcttcgccttgcttataaggaaggccaagaacttta 46497961  T
Q  218 aaatcatcaaaagctccaataaactgcttct-ctc--cattggtcatgaagggaaccttgactgagctgccattcagaaggtgaaaatcata 306  Q
    |||||||| ||| ||| |||||||||||||| |||  || | |||||||||  |||||| |||||| | ||||||| |||||||||||||||    
T  46497960 aaatcatcgaaatctctaataaactgcttcttctcatcactagtcatgaagtcaaccttaactgagtttccattcaaaaggtgaaaatcata 46497869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 75 - 306
Target Start/End: Complemental strand, 46490864 - 46490633
Alignment:
Q  75 gaagcttgtggtgtagtaactcagattcagaagccaccttctcaaccaaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaattt 174  Q
    |||||||||| | |||| |||| ||||||||||||| |||||||| ||||| || ||| |||||| |||| ||||||||||||| ||||||||  ||||     
T  46490864 gaagcttgtgttttagtgactccgattcagaagccaacttctcaagcaaagttggcagcccatcttttgcatttggaagaaaaaagtacatagtaaattc 46490765  T
Q  175 ccgcgtatcttctcctttgttataaggaagacaaagaactttaaaatcatcaaaagctccaataaactgcttctctccat--tggtcatgaagggaacct 272  Q
     ||| ||||||| ||||  ||||||||||| | |||||||||||||||||| ||||||| |||| | || |||| ||| |  | ||||||||||||||||    
T  46490764 acgcttatcttcgccttgcttataaggaaggccaagaactttaaaatcatcgaaagctctaatatattg-ttct-tccttgctagtcatgaagggaacct 46490667  T
Q  273 tgactgagctgccattcagaaggtgaaaatcata 306  Q
    | | |||||||||||||| |||||||||||||||    
T  46490666 taattgagctgccattcaaaaggtgaaaatcata 46490633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 16025696 - 16025405
Alignment:
Q  18 caaatgaaaccttgaatcttggaattctgaagtcacctacttcgactttagaaagatg---aagcttgtggtgtagtaactcagattcagaagccacctt 114  Q
    |||||||||||||||| |||||||||||||| |||||||||     || ||||| | |   ||| || |||||||||| ||| |||| |||||||||| |    
T  16025696 caaatgaaaccttgaaccttggaattctgaaatcacctactctcttttgagaaaaacgccgaagattttggtgtagtacctcggattgagaagccaccct 16025597  T
Q  115 ctcaaccaaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaatttccgcgtatcttctcctttgttataaggaagacaaagaact 214  Q
    ||||| |||||| ||||||||||||||| | |||||||||||||  |||||  | ||||  ||| ||||||| ||||   | || ||||||| ||| |||    
T  16025596 ctcaatcaaagcagacagtccatctctttcatttggaagaaaaaaatacattcaaaattgacgcttatcttcaccttgtctgtatggaagacgaagtact 16025497  T
Q  215 ttaaaatcatcaaaagctccaataaactgcttctctccattggtcatgaagggaaccttgactgagctgccattcagaaggtgaaaatcata 306  Q
    || |||||||| ||||| | |||||| || | |||     |||||||||||||||| |||| |  | |||||||||||| ||||||||||||    
T  16025496 ttgaaatcatcgaaagcacaaataaattgatcctcgttgctggtcatgaagggaactttgattacgttgccattcagaatgtgaaaatcata 16025405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 122 - 307
Target Start/End: Original strand, 46549004 - 46549189
Alignment:
Q  122 aaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaatttccgcgtatcttctcctttgttataaggaagacaaagaactttaaaat 221  Q
    |||| ||| ||||||||| |||  ||||||||||||| ||||||||||||||  ||  |||||| |||||  |||||||||||| |||||||||| |||     
T  46549004 aaagatgagagtccatcttttgtatttggaagaaaaaagtacatagagaattgtcgtttatcttttccttatttataaggaagataaagaactttgaaac 46549103  T
Q  222 catcaaaagctccaataaactgcttctctccattggtcatgaagggaaccttgactgagctgccattcagaaggtgaaaatcatat 307  Q
    |||||||| | |  |||||||| |  |  |   |||| ||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  46549104 catcaaaaacactgataaactgatcattcctgctggttatgaagggaaccttgaccgagctgccattgagaaggtgaaaatcatat 46549189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 90 - 238
Target Start/End: Original strand, 46236782 - 46236930
Alignment:
Q  90 gtaactcagattcagaagccaccttctcaaccaaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaatttccgcgtatcttctcc 189  Q
    |||||||| |||||||||||| |||||||||||| | |||||  |||||| |||| | |||||||||||| |||||||||||||  | |  |||||  ||    
T  46236782 gtaactcaaattcagaagccagcttctcaaccaaggttgacaacccatcttttgcatctggaagaaaaatatacatagagaattgacactcatctttgcc 46236881  T
Q  190 tttgttataaggaagacaaagaactttaaaatcatcaaaagctccaata 238  Q
    ||  |||||||||||| ||||||||||| || |||||||| ||||||||    
T  46236882 ttgattataaggaagataaagaactttataaccatcaaaatctccaata 46236930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 224
Target Start/End: Original strand, 47397278 - 47397427
Alignment:
Q  75 gaagcttgtggtgtagtaactcagattcagaagccaccttctcaaccaaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaattt 174  Q
    |||| ||||| | |||||||||| ||| ||||||||  |||||||||||| ||| || ||||||| |||| |||||||||||||||||||| ||||| |     
T  47397278 gaagattgtgttctagtaactcaaatttagaagccatgttctcaaccaaatctgtcaatccatcttttgcatttggaagaaaaatgtacatggagaaatg 47397377  T
Q  175 ccgcgtatcttctcctttgttataaggaagacaaagaactttaaaatcat 224  Q
     ||| ||||||| ||||   |||||| ||||| ||| ||||| |||||||    
T  47397378 gcgcttatcttcaccttgcctataagaaagacgaagtactttgaaatcat 47397427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 104 - 305
Target Start/End: Complemental strand, 46532045 - 46531844
Alignment:
Q  104 gaagccaccttctcaaccaaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaatttccgcgtatcttctcctttgttataaggaa 203  Q
    |||||||| ||||||| ||||||| ||| |||||||  ||| |  |||||||||| ||||||||||||||  ||  |||| |  ||||  ||||||||||    
T  46532045 gaagccactttctcaatcaaagctaacaatccatcttgtgcatcgggaagaaaaaagtacatagagaattgacgaatatcgttgccttgcttataaggaa 46531946  T
Q  204 gacaaagaactttaaaatcatcaaaagctccaataaactgcttctctccattggtcatgaagggaaccttgactgagctgccattcagaaggtgaaaatc 303  Q
    ||| ||| |  |||||| ||||||||||    |||||||||||||      | ||||||||||||||||| | ||||||||||   ||||||||||||||    
T  46531945 gacgaaggatcttaaaaccatcaaaagcatttataaactgcttcttcttgctagtcatgaagggaaccttaattgagctgccaccgagaaggtgaaaatc 46531846  T
Q  304 at 305  Q
    ||    
T  46531845 at 46531844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 257 - 306
Target Start/End: Complemental strand, 46538958 - 46538909
Alignment:
Q  257 gtcatgaagggaaccttgactgagctgccattcagaaggtgaaaatcata 306  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  46538958 gtcatgaagggaaccttgactgagctgccattaagaaggttaaaatcata 46538909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 305
Target Start/End: Original strand, 4613932 - 4614039
Alignment:
Q  198 aaggaagacaaagaactttaaaatcatcaaaagctccaataaactgcttctctccattggtcatgaagggaaccttgactgagctgccattcagaaggtg 297  Q
    ||||||||| |||||  ||||||||||||||| | || |||||||||| ||| | | | ||||||||||||||||| || ||| ||| |||| |||  ||    
T  4613932 aaggaagacgaagaatcttaaaatcatcaaaaacaccgataaactgctcctcacaactagtcatgaagggaaccttaacagagttgcaattctgaatatg 4614031  T
Q  298 aaaatcat 305  Q
    ||||||||    
T  4614032 aaaatcat 4614039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 306
Target Start/End: Original strand, 46554278 - 46554388
Alignment:
Q  196 ataaggaagacaaagaactttaaaatcatcaaaagctccaataaactgcttctctccattggtcatgaagggaaccttgactgagctgccattcagaagg 295  Q
    ||||||||||| ||| || |||||| |||||||| | |  ||||||||  |||| |   ||||| ||||||||||||||| |||||| ||||  ||||||    
T  46554278 ataaggaagacgaaggaccttaaaaccatcaaaaacactgataaactgactctccctgctggtcttgaagggaaccttgaatgagctaccatcaagaagg 46554377  T
Q  296 tgaaaatcata 306  Q
    |||||||||||    
T  46554378 tgaaaatcata 46554388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Complemental strand, 46539198 - 46539169
Alignment:
Q  29 ttgaatcttggaattctgaagtcacctact 58  Q
    ||||||||||||||||||||||||||||||    
T  46539198 ttgaatcttggaattctgaagtcacctact 46539169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 306
Target Start/End: Complemental strand, 46544430 - 46544381
Alignment:
Q  257 gtcatgaagggaaccttgactgagctgccattcagaaggtgaaaatcata 306  Q
    |||||||| ||||||||||||  ||||||||| ||||||| |||||||||    
T  46544430 gtcatgaaaggaaccttgacttggctgccattgagaaggttaaaatcata 46544381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 171
Target Start/End: Original strand, 46554173 - 46554250
Alignment:
Q  94 ctcagattcagaagccaccttctcaaccaaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaa 171  Q
    |||| |||| |||||||| ||||||| |||||||||||  |||||| |||| |  ||||| |||| ||||||||||||    
T  46554173 ctcatattccgaagccactttctcaatcaaagctgacaacccatcttttgcatcgggaagtaaaaagtacatagagaa 46554250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 138; Significance: 4e-72; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 75 - 337
Target Start/End: Complemental strand, 35155573 - 35155309
Alignment:
Q  75 gaagcttgtggtgtagtaactcagattcagaagccaccttctcaaccaaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaattt 174  Q
    |||||||||| | ||| |||||| ||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||    
T  35155573 gaagcttgtgctctagcaactcaaattcagaagccaccttctcaaccaaagctgatagtccatcttttgcatttggaagaaaaatgtacatagagaattt 35155474  T
Q  175 ccgcgtatcttctcctttgttataaggaagacaaagaactttaaaatcatcaaaagctccaataaactgcttctctccattggtcatgaagggaaccttg 274  Q
    ||||  ||||| |||||  ||||| ||||||| ||||||||||||| |||||||||||| |||||| || |     |   ||||||||||||||||||||    
T  35155473 ccgctcatcttttccttgcttatacggaagacgaagaactttaaaaccatcaaaagctctaataaattgatcaaggctgctggtcatgaagggaaccttg 35155374  T
Q  275 actgagctgccattcagaaggtgaaaatcata--tttttgtcatatatttaggaaacggttgaat 337  Q
    ||||||||||||||||||||||||||||||||  ||||||||||| || ||| ||||||||||||    
T  35155373 actgagctgccattcagaaggtgaaaatcatatttttttgtcatacatctagaaaacggttgaat 35155309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 101 - 313
Target Start/End: Complemental strand, 35162567 - 35162356
Alignment:
Q  101 tcagaagccaccttctcaaccaaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaatttccgcgtatcttctcctttgttataag 200  Q
    |||||||||||||||||||||||||||||||| |||||| |||| |||||||||||| ||||||||||||||||||||  ||||| |||||  |||||||    
T  35162567 tcagaagccaccttctcaaccaaagctgacaggccatcttttgcatttggaagaaaa-tgtacatagagaatttccgctcatcttttccttgcttataag 35162469  T
Q  201 gaagacaaagaactttaaaatcatcaaaagctccaataaactgcttctctccattggtcatgaagggaaccttgactgagctgccattcagaaggtgaaa 300  Q
    |||||| ||||||||||||| |||||||||||| ||||||||| |         | |||||||||||||||||||||||||| |||||||||||||||||    
T  35162468 gaagacgaagaactttaaaaccatcaaaagctctaataaactgatcaaggttggtagtcatgaagggaaccttgactgagcttccattcagaaggtgaaa 35162369  T
Q  301 atcatatttttgt 313  Q
    |||||| ||||||    
T  35162368 atcatagttttgt 35162356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 36 - 306
Target Start/End: Complemental strand, 15556206 - 15555936
Alignment:
Q  36 ttggaattctgaagtcacctacttcgactttagaaagatgaagcttgtggtgtagtaactcagattcagaagccaccttctcaaccaaagctgacagtcc 135  Q
    ||||||||||||||||||| |||| |||||||||||||| || |||  ||||||||||||||||||| ||||||||||| ||||||||||| || |||||    
T  15556206 ttggaattctgaagtcaccaactttgactttagaaagattaaacttacggtgtagtaactcagattctgaagccaccttttcaaccaaagccgagagtcc 15556107  T
Q  136 atctcttgcgtttggaagaaaaatgtacatagagaatttccgcgtatcttctcctttgttataaggaagacaaagaactttaaaatcatcaaaagctcca 235  Q
    |||| |||| | |||||||| || ||| |||||||||   ||   || ||  ||||  |||||| |||||||||| ||||| ||| |||||||||| |||    
T  15556106 atcttttgcatctggaagaataaagtagatagagaatcggcgatcatattggccttgtttataatgaagacaaagtactttgaaaccatcaaaagcacca 15556007  T
Q  236 ataaactgcttctctccattggtcatgaagggaaccttgactgagctgccattcagaaggtgaaaatcata 306  Q
    ||| | || | ||||    || |||| || |||||||||| |||||| ||||| |||||||||||||||||    
T  15556006 atatattgatcctctttgctgctcataaacggaaccttgagtgagctaccattgagaaggtgaaaatcata 15555936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 7e-46; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 75 - 308
Target Start/End: Original strand, 9692688 - 9692921
Alignment:
Q  75 gaagcttgtggtgtagtaactcagattcagaagccaccttctcaaccaaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaattt 174  Q
    |||||||||| | ||| |||||| ||||||||||||| |||||||||| |||| | ||| ||||| |||| ||||||||||||||||||||||||||||     
T  9692688 gaagcttgtgctctaggaactcaaattcagaagccactttctcaaccatagctaatagtacatcttttgcatttggaagaaaaatgtacatagagaattg 9692787  T
Q  175 ccgcgtatcttctcctttgttataaggaagacaaagaactttaaaatcatcaaaagctccaataaactgcttctctccattggtcatgaagggaaccttg 274  Q
     ||| ||| || |||||  ||||||||||||| ||||||||||||| |||||||||||| ||||||||| |         || |||| || |||||||||    
T  9692788 tcgcttattttttccttaattataaggaagacgaagaactttaaaaccatcaaaagctctaataaactgatcaaggttgctgctcataaaaggaaccttg 9692887  T
Q  275 actgagctgccattcagaaggtgaaaatcatatt 308  Q
    ||||||||||||||| ||||||||||||||||||    
T  9692888 actgagctgccattcggaaggtgaaaatcatatt 9692921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 75 - 311
Target Start/End: Original strand, 9675666 - 9675902
Alignment:
Q  75 gaagcttgtggtgtagtaactcagattcagaagccaccttctcaaccaaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaattt 174  Q
    |||||||| | | ||| |||||| |||||||||||||||| ||||||| ||| || |||||| || |||| ||||||||||||||||||||||||||||     
T  9675666 gaagcttgggctctaggaactcaaattcagaagccaccttttcaaccatagccgatagtccaccttttgcatttggaagaaaaatgtacatagagaattg 9675765  T
Q  175 ccgcgtatcttctcctttgttataaggaagacaaagaactttaaaatcatcaaaagctccaataaactgcttctctccattggtcatgaagggaaccttg 274  Q
     ||| ||||| | ||||  | |||||| |||||||| ||||||||| |||||||||||| ||||||||| |         || |||| |||||||| |||    
T  9675766 tcgcttatctccaccttgctcataagggagacaaagcactttaaaaccatcaaaagctctaataaactgatcaaggttggtgctcataaagggaactttg 9675865  T
Q  275 actgagctgccattcagaaggtgaaaatcatattttt 311  Q
    |||||||||||||||||||||||||||||||| ||||    
T  9675866 actgagctgccattcagaaggtgaaaatcatagtttt 9675902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 76 - 304
Target Start/End: Complemental strand, 20359281 - 20359053
Alignment:
Q  76 aagcttgtggtgtagtaactcagattcagaagccaccttctcaaccaaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaatttc 175  Q
    |||||| | ||||||||| ||| ||| ||||| || ||||||||| ||||||| |||||||||| |||||||||| | |||||| |||||||||||||      
T  20359281 aagcttttcgtgtagtaattcatatttagaagtcatcttctcaactaaagctggcagtccatcttttgcgtttggcaaaaaaatatacatagagaattga 20359182  T
Q  176 cgcgtatcttctcctttgttataaggaagacaaagaactttaaaatcatcaaaagctccaataaactgcttctctccattggt---catgaagggaacct 272  Q
    ||||||||||  ||||| ||||||||||||| |||||||||| || | ||| ||||| ||||||||||| ||| ||  ||| |   |||||| |||||||    
T  20359181 cgcgtatcttgaccttttttataaggaagacgaagaactttagaaccgtcataagcttcaataaactgcatct-tc--ttgcttaccatgaaaggaacct 20359085  T
Q  273 tgactgagctgccattcagaaggtgaaaatca 304  Q
    |||||||| | ||||||| ||| |||||||||    
T  20359084 tgactgagtttccattcaaaagatgaaaatca 20359053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 86 - 304
Target Start/End: Complemental strand, 20144761 - 20144543
Alignment:
Q  86 tgtagtaactcagattcagaagccaccttctcaaccaaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaatttccgcgtatctt 185  Q
    |||||||| ||| ||| ||||| || ||||||||| ||||||| |||||||||| ||||||| || | |||||| |||||||||||||  ||||||||||    
T  20144761 tgtagtaattcatatttagaagtcatcttctcaactaaagctggcagtccatcttttgcgttaggcaaaaaaatatacatagagaattgacgcgtatctt 20144662  T
Q  186 ctcctttgttataaggaagacaaagaactttaaaatcatcaaaagctccaataaactgcttctctccattggt---catgaagggaaccttgactgagct 282  Q
      ||||| ||||||||||||| |||||||||| || | ||| ||||| ||||||||||| ||| ||  ||| |   |||||| ||||||||||||||| |    
T  20144661 gaccttttttataaggaagacgaagaactttagaaccgtcataagcttcaataaactgcatct-tc--ttgcttaccatgaaaggaaccttgactgagtt 20144565  T
Q  283 gccattcagaaggtgaaaatca 304  Q
     ||||||| ||| |||||||||    
T  20144564 tccattcaaaagatgaaaatca 20144543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 76 - 304
Target Start/End: Original strand, 20169003 - 20169231
Alignment:
Q  76 aagcttgtggtgtagtaactcagattcagaagccaccttctcaaccaaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaatttc 175  Q
    |||||| | ||||||||| ||| |||  |||| || ||||||||| ||||||| |||||||||| |||||||||| | |||||| |||||||||||||      
T  20169003 aagcttttcgtgtagtaattcatattttgaagtcatcttctcaactaaagctggcagtccatcttttgcgtttggcaaaaaaatatacatagagaattga 20169102  T
Q  176 cgcgtatcttctcctttgttataaggaagacaaagaactttaaaatcatcaaaagctccaataaactgcttctctccattggt---catgaagggaacct 272  Q
    ||||||||||  ||||| ||||||||||||| |||||||||| || | ||| ||||| ||||||| ||| ||| ||  ||| |   |||||| |||||||    
T  20169103 cgcgtatcttgaccttttttataaggaagacgaagaactttagaaccgtcataagcttcaataaattgcatct-tc--ttgcttaccatgaaaggaacct 20169199  T
Q  273 tgactgagctgccattcagaaggtgaaaatca 304  Q
    |||||||| | ||||||| ||| |||||||||    
T  20169200 tgactgagtttccattcaaaagatgaaaatca 20169231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 92 - 306
Target Start/End: Complemental strand, 17736065 - 17735851
Alignment:
Q  92 aactcagattcagaagccaccttctcaaccaaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaatttccgcgtatcttctcctt 191  Q
    |||||||| |||||||| || || |||| |||||||||||  |||||| || |||  |||||||||| ||| |||||||||   ||| |||| |  ||||    
T  17736065 aactcagaatcagaagctactttatcaatcaaagctgacaacccatctttttcgtcaggaagaaaaaagtaaatagagaatgcacgcttatcattgcctt 17735966  T
Q  192 tgttataaggaagacaaagaactttaaaatcatcaaaagctccaataaactgcttctctccattggtcatgaagggaaccttgactgagctgccattcag 291  Q
      || |||||||||| ||| ||||||||| |||||||||  |  |||||||| || |      ||||||| ||||||||||| |||||  ||||||| ||    
T  17735965 gtttgtaaggaagaccaaggactttaaaaccatcaaaagaactgataaactgattattcttgctggtcataaagggaacctttactgacttgccattgag 17735866  T
Q  292 aaggtgaaaatcata 306  Q
    ||||| |||||||||    
T  17735865 aaggtcaaaatcata 17735851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 172
Target Start/End: Complemental strand, 17745245 - 17745165
Alignment:
Q  92 aactcagattcagaagccaccttctcaaccaaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaat 172  Q
    |||||||| |||||||| || || |||| |||||||||||  |||||| || |||  |||||||||| ||| |||||||||    
T  17745245 aactcagaatcagaagctactttatcaatcaaagctgacaaaccatctttttcgtcaggaagaaaaaagtaaatagagaat 17745165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University