View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7963_high_18 (Length: 287)
Name: NF7963_high_18
Description: NF7963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7963_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 32 - 271
Target Start/End: Complemental strand, 7146193 - 7145952
Alignment:
| Q |
32 |
cattattcttactaatgcttatttacaagagcacaccataaaatctaatcccaagtcgaacaccattaaatgctaccctgagaaaaccctagctacttcg |
131 |
Q |
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| T |
7146193 |
cattattcttactaatgcttatttacaagagcacaccataaaatctaatcccaagtcgaacaccattaaatgctaccctgagaaaaccctagctacttcg |
7146094 |
T |
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| Q |
132 |
nnnnnnnnnn--atttactgccactgtaatcaataggcgctccaaagtatgctttagccgatttacagcatcaacatgcattcatccaacgccacttcgc |
229 |
Q |
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| T |
7146093 |
ttttttttttttatttactgccactgtaatcaataggcgctccaaagtatgctttagccgatttacagcatcaacatgcattcatccaacgccacttcgc |
7145994 |
T |
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| Q |
230 |
ctccaactccaaaaaccactgaaaactattgccgcaaaagta |
271 |
Q |
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| T |
7145993 |
ctccaactccaaaaaccactgaaaactattgccgcaaaagta |
7145952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 247
Target Start/End: Complemental strand, 28817235 - 28817167
Alignment:
| Q |
171 |
ccaaagtatgctttagccgatttacagcatcaacatgcattcatccaacgccacttcgcctccaactccaaaaacca |
247 |
Q |
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| T |
28817235 |
ccaaagtatgctgtagccgatttacagcatcaa--------catccaacgccaatttgcctccaactccaaaaacca |
28817167 |
T |
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