View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7963_high_19 (Length: 284)

Name: NF7963_high_19
Description: NF7963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7963_high_19
NF7963_high_19
[»] scaffold0428 (3 HSPs)
scaffold0428 (1-271)||(2315-2585)
scaffold0428 (2-217)||(15069-15278)
scaffold0428 (92-218)||(13771-13896)
[»] chr6 (11 HSPs)
chr6 (1-271)||(33258194-33258464)
chr6 (1-271)||(33414568-33414836)
chr6 (49-247)||(31564920-31565117)
chr6 (74-271)||(33269541-33269740)
chr6 (2-141)||(33293102-33293241)
chr6 (2-248)||(33395074-33395321)
chr6 (151-250)||(33384049-33384148)
chr6 (2-217)||(33278975-33279184)
chr6 (3-95)||(28872999-28873091)
chr6 (92-231)||(33406911-33407049)
chr6 (92-218)||(33280357-33280482)
[»] chr2 (1 HSPs)
chr2 (2-250)||(17447713-17447961)


Alignment Details
Target: scaffold0428 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 2585 - 2315
Alignment:
Q  1 agggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2585 agggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataag 2486  T
Q  101 aaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2485 aaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgtt 2386  T
Q  201 ggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttc 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2385 ggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttc 2315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 2 - 217
Target Start/End: Original strand, 15069 - 15278
Alignment:
Q  2 gggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataaga 101  Q
    |||| |||||||||||| || || | ||||||||| |||||| ||| ||||||| |||||||||| || |  ||||||||||||| ||| ||||| ||||    
T  15069 gggacgatggactgtaataatgcccttgccgaaactgaaggttatcatgaaaaggcgcaagcataccttag-aaaaagggtctcttatcagctgacaaga 15167  T
Q  102 aatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttg 201  Q
    ||||||| |  |||  |    |||||||||| |||||||| || || ||||||||||||  |||||||||||||||| ||| ||||||||||||||| ||    
T  15168 aatccggcaagctacta----aaggaagaattggtacata-cattcacgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatg 15262  T
Q  202 gcagaagtgagaaatt 217  Q
    |||||||| |||||||    
T  15263 gcagaagttagaaatt 15278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 92 - 218
Target Start/End: Original strand, 13771 - 13896
Alignment:
Q  92 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaacc 191  Q
    ||||| ||||||||||| ||| ||  ||  |||||| ||||| |||| || || || |||||||| ||||||| ||||| ||||||| ||| |||| ||     
T  13771 gctgacaagaaatccggaagattaaaagctgaaggaggaatcagtaccta-cattcacgattcacgcattggttttctatttgaagttaactgtgatact 13869  T
Q  192 gactttgttggcagaagtgagaaattt 218  Q
    |||||| ||||||||||||||||||||    
T  13870 gacttttttggcagaagtgagaaattt 13896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 33258464 - 33258194
Alignment:
Q  1 agggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33258464 agggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataag 33258365  T
Q  101 aaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33258364 aaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgtt 33258265  T
Q  201 ggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttc 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33258264 ggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttc 33258194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 33414836 - 33414568
Alignment:
Q  1 agggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataag 100  Q
    |||||||||||||||||||||||||| ||| ||||| ||||| |||||||||||| |||||||||||||||  |||||||||||||||||||||||||||    
T  33414836 agggatgatggactgtaagaaagctcttgctgaaacggaaggcgatcttgaaaaggcgcaagcatatctcaggaaaaagggtctctcatccgctgataag 33414737  T
Q  101 aaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgtt 200  Q
    |||||||| ||||||||||  |||||||||||||||||||| || || |||| |||  |||||||||||||||||||||||| ||||||| |||||||||    
T  33414736 aaatccggaagactagcagctgaaggaagaatcggtacata-cattcacgatgcacgtattggtgttctaattgaagtgaactgtgaaacggactttgtt 33414638  T
Q  201 ggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttc 271  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||| |||  || ||||||||||||    
T  33414637 ggcagaagtgagaaattcaaggagttggttgatgatcttgcaatgcaagttgctgctt-gtccacaggttc 33414568  T

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Target: chr6; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 49 - 247
Target Start/End: Original strand, 31564920 - 31565117
Alignment:
Q  49 tgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcg 148  Q
    ||||||| |||||||||| ||||  ||||||||||||||||||||||| ||||||||||| |||| ||  |  |||||||||||||||||||| || ||     
T  31564920 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcggtacata-cattca 31565018  T
Q  149 cgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgca 247  Q
    |||||||| |||| |||||||||||||||||||  ||||||| |||||| | || |||||||||||||| |||||||||||| | ||||||||||||||    
T  31565019 cgattcacgcattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagttggttcatgatcttgcaatgca 31565117  T

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Target: chr6; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 74 - 271
Target Start/End: Complemental strand, 33269740 - 33269541
Alignment:
Q  74 aaaaagggtctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatat---cactcgcgattcacacattggtgttcta 170  Q
    ||||||||||||||||||||||||||||| || |  ||||||||||  |||| ||||||||||||||||   || || | || ||  ||| |||||||||    
T  33269740 aaaaagggtctctcatccgctgataagaagtctgcaagactagcagctgaagaaagaatcggtacatatatacattcacaatgcatgcatcggtgttcta 33269641  T
Q  171 attgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggtt 270  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||| |||  || |||||||||||    
T  33269640 attgaagtgaactgtgaaaccgactttgttggcagaagtgagaaattcaagaagttggttgatgatcttgcaatgcaagttgctgctt-gtccacaggtt 33269542  T

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Target: chr6; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 2 - 141
Target Start/End: Complemental strand, 33293241 - 33293102
Alignment:
Q  2 gggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataaga 101  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||  | ||||||| ||||  |||||||||||||||| |||||||||||    
T  33293241 gggatgatggactgtaagaaagctcatgctgaaacagaaggtgatcttgaaaaggtgaaagcatacctcagaaaaaagggtctctcattcgctgataaga 33293142  T
Q  102 aatccgggagactagcagaagaaggaagaatcggtacata 141  Q
    ||||| | ||||||||||  ||||||||||| ||||||||    
T  33293141 aatccagaagactagcagctgaaggaagaattggtacata 33293102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 2 - 248
Target Start/End: Complemental strand, 33395321 - 33395074
Alignment:
Q  2 gggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataaga 101  Q
    ||||| |||||||||||||||||    ||||||||  ||||||||||||||||| | ||| |||| || |  | ||||||||||||||| ||||| ||||    
T  33395321 gggattatggactgtaagaaagccttagccgaaactaaaggtgatcttgaaaaggcccaatcataccttagaacaaagggtctctcatcagctgacaaga 33395222  T
Q  102 aatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttg 201  Q
    ||||||| || |||||||  |||||||||||||||| ||| || |  |||| ||| |||   |||||| |||||||||||| ||||||||||||||||||    
T  33395221 aatccggtaggctagcagctgaaggaagaatcggtaaata-cattgacgatgcacgcatctatgttctgattgaagtgaactgtgaaaccgactttgttg 33395123  T
Q  202 g--cagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaa 248  Q
    |  ||||||||| | ||| |||||||||||||  |||||| ||||||||    
T  33395122 gcacagaagtgatagattcaaggagttggttgctgatctttcaatgcaa 33395074  T

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Target: chr6; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 151 - 250
Target Start/End: Complemental strand, 33384148 - 33384049
Alignment:
Q  151 attcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagt 250  Q
    |||||||||| ||||||||||||||||||||| || ||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  33384148 attcacacatcggtgttctaattgaagtgaactgtcaaaccgactttgtcggcagaagtgagaaaattaaggagttggttgatgatcttgcaatgcaagt 33384049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 2 - 217
Target Start/End: Complemental strand, 33279184 - 33278975
Alignment:
Q  2 gggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataaga 101  Q
    |||| |||||||||||| || || | ||||||||| |||||| ||| ||||||| |||||||||| || |  ||||||||||||| ||| ||||| ||||    
T  33279184 gggacgatggactgtaataatgcccttgccgaaactgaaggttatcatgaaaaggcgcaagcataccttag-aaaaagggtctcttatcagctgacaaga 33279086  T
Q  102 aatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttg 201  Q
    ||||||| |  |||  |    |||||||||| |||||||| || || ||||||||||||  |||||||||||||||| ||| ||||||||||||||| ||    
T  33279085 aatccggcaagctacta----aaggaagaattggtacata-cattcacgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatg 33278991  T
Q  202 gcagaagtgagaaatt 217  Q
    |||||||| |||||||    
T  33278990 gcagaagttagaaatt 33278975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 3 - 95
Target Start/End: Original strand, 28872999 - 28873091
Alignment:
Q  3 ggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctg 95  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||| || ||||||| ||||   |||||||||||||||| ||||    
T  28872999 ggatgatggactgtaagaaagcccttgccgaaacagaaggtgatcttgaaaaggcgtaagcatacctcagataaaagggtctctcatctgctg 28873091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 92 - 231
Target Start/End: Complemental strand, 33407049 - 33406911
Alignment:
Q  92 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaacc 191  Q
    ||||||||||||||| | ||||||||||  || |||| || |||||||||| | |  | ||| |  |||| ||||| |||||| |||||||  |||||||    
T  33407049 gctgataagaaatccagaagactagcagccgatggaaaaaccggtacatat-attgacaatttatgcattagtgttataattgtagtgaactatgaaacc 33406951  T
Q  192 gactttgttggcagaagtgagaaatttaaggagttggttg 231  Q
    ||||||||||||||||||||| ||||  ||||||||||||    
T  33406950 gactttgttggcagaagtgagcaattcgaggagttggttg 33406911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 92 - 218
Target Start/End: Complemental strand, 33280482 - 33280357
Alignment:
Q  92 gctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaacc 191  Q
    ||||| ||||||||||| ||| ||  ||  |||||| ||||| |||| || || || |||||||| ||||||| ||||| ||||||| ||| |||| ||     
T  33280482 gctgacaagaaatccggaagattaaaagctgaaggaggaatcagtaccta-cattcacgattcacgcattggttttctatttgaagttaactgtgatact 33280384  T
Q  192 gactttgttggcagaagtgagaaattt 218  Q
    |||||| ||||||||||||||||||||    
T  33280383 gacttttttggcagaagtgagaaattt 33280357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 134; Significance: 8e-70; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 2 - 250
Target Start/End: Original strand, 17447713 - 17447961
Alignment:
Q  2 gggatgatggactgtaagaaagctcgtgccgaaacagaaggtgatcttgaaaagccgcaagcatatctcatcaaaaaggg-tctctcatccgctgataag 100  Q
    ||||| ||||||||||||||||| | ||||||||| |||||||||||||||||| |||||||||| ||||  |||||||| |||||||||||||||||||    
T  17447713 gggattatggactgtaagaaagcccttgccgaaactgaaggtgatcttgaaaaggcgcaagcatacctcagaaaaaaggggtctctcatccgctgataag 17447812  T
Q  101 aaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgtt 200  Q
    |||||||| ||||| ||||  |||||||||||||||||||| || || |||| ||| ||| |||| |||||||||| |||||  ||||||||||||||||    
T  17447813 aaatccggaagactggcagctgaaggaagaatcggtacata-cattcacgatgcacgcatcggtggtctaattgaattgaactttgaaaccgactttgtt 17447911  T
Q  201 ggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagt 250  Q
    |||||||| |||| ||| |||||||||||||| |||||||||||||||||    
T  17447912 ggcagaagggagagattcaaggagttggttgatgatcttgcaatgcaagt 17447961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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