View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7963_high_20 (Length: 281)
Name: NF7963_high_20
Description: NF7963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7963_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 22 - 266
Target Start/End: Complemental strand, 20992139 - 20991906
Alignment:
| Q |
22 |
ttccttatatttcatggttcatttccttatatctcaacatagcatccaacacatcatatgaatgttaaattttattatcctgggtattaatttcctccct |
121 |
Q |
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| T |
20992139 |
ttccttatatttcatggttcatttccttatatctcaacatagtatccaacacatcatacaaatgttaaattttattatcctgggtattaatttcctccct |
20992040 |
T |
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| Q |
122 |
ttacatctaaataattaaacactataatatcaatatagtatccgtatagtaccatcctatattatctgtccatgtcacaattccactgctgagtttctaa |
221 |
Q |
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| T |
20992039 |
ttacatctaaataactaaacactataatatca-----------gtatagtaccatcctatattatctgtccatgtcacaattccactgctgagtttctaa |
20991951 |
T |
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| Q |
222 |
aaaatctgaaactatcatcacagtgtgcttatctatatgattctt |
266 |
Q |
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| T |
20991950 |
aaaatctgaaactatcatcacagtgtgcttatctatacgattctt |
20991906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 266
Target Start/End: Complemental strand, 21002002 - 21001871
Alignment:
| Q |
137 |
taaacactataatatcaatatagtatccgtatagtaccatcctatattatctgtccatgtcacaattccactgctgagtttctaaaaaatctgaaa--ct |
234 |
Q |
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|||| |||||||| |||| |||||||| |||||||||||||||||||||||||| ||||| |||||||||| |||||||| ||||||| ||| || |
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| T |
21002002 |
taaagactataatttcaacatagtatcattatagtaccatcctatattatctgtctttgtcaaaattccactgtcgagtttctccaaaatcttaaactct |
21001903 |
T |
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| Q |
235 |
atcatcacagtgtgcttatctatatgattctt |
266 |
Q |
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| T |
21001902 |
aatatcacaatgttctaatctatatgattctt |
21001871 |
T |
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