View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7963_high_23 (Length: 261)
Name: NF7963_high_23
Description: NF7963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7963_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 245
Target Start/End: Complemental strand, 4749747 - 4749515
Alignment:
| Q |
14 |
acctgtgaaagatatttcatttgcctaatttccgtatgtgtaattcctttttgatcggaaggccttcttgccataatctcttcttgttctttctgaaagg |
113 |
Q |
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| T |
4749747 |
acctgagaaagatatttcatttgcctaatttccgtatgtgtaagtcctttttgatcggaaggccttcttgccataatctcttcttgttctttctgaaagg |
4749648 |
T |
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| Q |
114 |
gttcatagttttgtttgtt-nnnnnnnnnncagtaacaaattttgaaaatgccacattaattaatagtattaaaaccttggctctttcgaagacatgtgg |
212 |
Q |
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| T |
4749647 |
gttcatagttttgtttgttaaaaaaaaaaacagtaacaaattttgaaaatgccacattaattaatagtattaaaaccttggctctttcgaagacatgtgg |
4749548 |
T |
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| Q |
213 |
atgattagtgaggttgataacggtccacaaaac |
245 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
4749547 |
atgattagtgaggttgataacggtccacaaaac |
4749515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 112
Target Start/End: Complemental strand, 4758293 - 4758195
Alignment:
| Q |
14 |
acctgtgaaagatatttcatttgcctaatttccgtatgtgtaattcctttttgatcggaaggccttcttgccataatctcttcttgttctttctgaaag |
112 |
Q |
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|||| ||||||||||| ||||||| |||||||| || | | | |||||||||| |||||||||| || |||| |||||||||||||||||||||||| |
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| T |
4758293 |
acctttgaaagatattgcatttgcttaatttccttaaggttcagtcctttttgagtggaaggccttgtttccatgatctcttcttgttctttctgaaag |
4758195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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