View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7963_high_26 (Length: 258)
Name: NF7963_high_26
Description: NF7963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7963_high_26 |
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| [»] chr4 (3 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 258
Target Start/End: Complemental strand, 28607527 - 28607286
Alignment:
| Q |
17 |
aattgttggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattgtaaatagtcttctacctatttaatgcaaggatacatt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28607527 |
aattgttggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattgtaaatagtcttctacctatttaatgcaaggatgcatt |
28607428 |
T |
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| Q |
117 |
tttctacaaataggaaagctatgatatagcttacggtggagagacatggctaggcatagcttgctgtgcagaaaagtgtgaaggcttgcaattcatttca |
216 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28607427 |
tttctacaaataggaaagctatggtatagcttacggtggagagacatggctaggcatagcttgctgtgcagaaaagtgtgaaggcttgcaattcatttca |
28607328 |
T |
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| Q |
217 |
agtttcacactttgaataccatgacttttggtgtaagagtgt |
258 |
Q |
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||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
28607327 |
agtttcacactctgaatgtcatgacttttggtgtaagagtgt |
28607286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 20 - 258
Target Start/End: Complemental strand, 28612286 - 28612048
Alignment:
| Q |
20 |
tgttggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattgtaaatagtcttctacctatttaatgcaaggatacattttt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28612286 |
tgttggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattgtaaatagtcttctacctatttaatgcaaggatgcattttt |
28612187 |
T |
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| Q |
120 |
ctacaaataggaaagctatgatatagcttacggtggagagacatggctaggcatagcttgctgtgcagaaaagtgtgaaggcttgcaattcatttcaagt |
219 |
Q |
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| T |
28612186 |
ctacaaataggaaagctatggtatagcttacggtggagagacatggctaggcatagcttgctgtgcagaaaagtgtgaaggcttgcaattcatttcaagt |
28612087 |
T |
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| Q |
220 |
ttcacactttgaataccatgacttttggtgtaagagtgt |
258 |
Q |
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| T |
28612086 |
ttcacactctgaatgtcatgacttttggtgtaagagtgt |
28612048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 11104127 - 11104185
Alignment:
| Q |
19 |
ttgttggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattg |
79 |
Q |
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|||||||||||| ||||||||||| ||| |||||||||||||||| ||||||| ||||| |
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| T |
11104127 |
ttgttggccccatcacgtgtgggttatgt--ccagccaaagacaattgctacaagcaattg |
11104185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 20 - 258
Target Start/End: Original strand, 34906753 - 34906991
Alignment:
| Q |
20 |
tgttggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattgtaaatagtcttctacctatttaatgcaaggatacattttt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34906753 |
tgttggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattgtaaatagtcttctacctatttaatgcaaggatgaattttt |
34906852 |
T |
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| Q |
120 |
ctacaaataggaaagctatgatatagcttacggtggagagacatggctaggcatagcttgctgtgcagaaaagtgtgaaggcttgcaattcatttcaagt |
219 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34906853 |
ctacaaataggaaagctatggtatagcttacggtggagagacatggctaggcatagcttgctgtgcagaaaagtgtgaaggcttgcaattcatttcaagt |
34906952 |
T |
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| Q |
220 |
ttcacactttgaataccatgacttttggtgtaagagtgt |
258 |
Q |
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| T |
34906953 |
ttcacactctgaatgtcatgacttttggtgtaagagtgt |
34906991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 20 - 255
Target Start/End: Original strand, 8538832 - 8539067
Alignment:
| Q |
20 |
tgttggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaa-ttgtaaatagtcttctacctatttaatgcaaggatacatttt |
118 |
Q |
| |
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||||||||||||||| |||||||| |||| |||||||||||||||||||| || ||| || ||| ||||||||||| ||||||||||| ||| |||||| |
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| T |
8538832 |
tgttggccccaccacatgtgggtactgtt-ccagccaaagacaattactataaataaattataactagtcttctactcatttaatgcaatgatgcatttt |
8538930 |
T |
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| Q |
119 |
tctacaaataggaaagctatgatatagcttacggtggagagacatggctaggcatagcttgctgtgcagaaaagtgtgaaggcttgcaattcatttcaag |
218 |
Q |
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| T |
8538931 |
tctacaaataggaaagctatggtatagcttaaggtggagagacatggctaggcatagcttgctgtgcagaaaagtgtgaaggcttgcaattcattccaag |
8539030 |
T |
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| Q |
219 |
tttcacactttgaataccatgacttttggtgtaagag |
255 |
Q |
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||||||||| ||||| |||||||||||||||||||| |
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| T |
8539031 |
tttcacactctgaatgtcatgacttttggtgtaagag |
8539067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 20 - 168
Target Start/End: Original strand, 2308757 - 2308905
Alignment:
| Q |
20 |
tgttggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattgtaaatagtcttctacctatttaatgcaaggatacattttt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2308757 |
tgttggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattgtaaatagtcttctacctatttaatgcaaggatgtattttt |
2308856 |
T |
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| Q |
120 |
ctacaaataggaaagctatgatatagcttacggtggagagacatggcta |
168 |
Q |
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||| |||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
2308857 |
ctataaataggaaaactatggtatagcttacggtggagagacatggcta |
2308905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 85 - 254
Target Start/End: Original strand, 17123887 - 17124058
Alignment:
| Q |
85 |
agtcttctacctatttaatgcaaggatacatt--tttctacaaataggaaagctatgatatagcttacggtggagagacatggctaggcatagcttgctg |
182 |
Q |
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||||||||| ||||||||||||||| |||| ||||||||||||||||| |||| ||||||||| ||||||||| ||||||||||| || |||||| |
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| T |
17123887 |
agtcttctatttatttaatgcaaggaagcattattttctacaaataggaaaactatagtatagcttaaggtggagaggcatggctaggcttatcttgctt |
17123986 |
T |
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| Q |
183 |
tgcagaaaagtgtgaaggcttgcaattcatttcaagtttcacactttgaataccatgacttttggtgtaaga |
254 |
Q |
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||||||||||||||| | |||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
17123987 |
agcagaaaagtgtgaatgtttgcaattcattccaagtttcacactttgaatgttatgacttttggtgtaaga |
17124058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 12935076 - 12935136
Alignment:
| Q |
17 |
aattgttggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattg |
79 |
Q |
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|
||||||||||||||||||||||||| || | ||||||||||||||||| ||||||| ||||| |
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| T |
12935076 |
aattgttggccccaccacgtgtggg--ttatgtccagccaaagacaattgctacaagcaattg |
12935136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 12930333 - 12930390
Alignment:
| Q |
20 |
tgttggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattg |
79 |
Q |
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|||||||||||||||||||||| || | ||||||||||||||||| ||||||| ||||| |
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| T |
12930333 |
tgttggccccaccacgtgtggg--ttatgtccagccaaagacaattgctacaagcaattg |
12930390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 151
Target Start/End: Original strand, 17121733 - 17121801
Alignment:
| Q |
85 |
agtcttctacctatttaatgcaaggatacatttt--tctacaaataggaaagctatgatatagcttacg |
151 |
Q |
| |
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||||||||| ||||||||||||||| |||||| |||||||||||||||| |||| |||||||||| |
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| T |
17121733 |
agtcttctatgtatttaatgcaaggaagcatttttttctacaaataggaaagatatggcatagcttacg |
17121801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 51298522 - 51298598
Alignment:
| Q |
19 |
ttgttggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattgtaaatagtcttctacc |
95 |
Q |
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|||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||| ||||||| ||||||| |
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| T |
51298522 |
ttgttggccccaccacgtgtggctattgtttctggccaaaaacaattactacaagtaattgcaaatagttttctacc |
51298598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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