View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7963_high_29 (Length: 245)

Name: NF7963_high_29
Description: NF7963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7963_high_29
NF7963_high_29
[»] chr7 (2 HSPs)
chr7 (1-243)||(7161736-7161978)
chr7 (113-236)||(3916869-3916992)
[»] chr8 (9 HSPs)
chr8 (118-230)||(3171534-3171646)
chr8 (118-243)||(3139901-3140026)
chr8 (120-197)||(3168048-3168125)
chr8 (118-227)||(2982523-2982632)
chr8 (126-227)||(2707759-2707860)
chr8 (119-220)||(2909011-2909112)
chr8 (123-175)||(3004665-3004717)
chr8 (145-236)||(3280253-3280344)
chr8 (131-243)||(2913962-2914074)
[»] scaffold0065 (1 HSPs)
scaffold0065 (123-229)||(47802-47908)
[»] chr1 (1 HSPs)
chr1 (120-244)||(10753402-10753526)


Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 7161978 - 7161736
Alignment:
Q  1 caagaatgaaatccatttattttttggaaatcaagaaaatcaaacaacagaaaccaaataacattagcaatgattttaagaggatattggtacctctttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7161978 caagaatgaaatccatttattttttggaaatcaagaaaatcaaacaacagaaaccaaataacattagcaatgattttaagaggatattggtacctctttt 7161879  T
Q  101 aaagaaatgcatatctctttaagattatgattgggatgtgagcaattttaggccatgttgcacttgtttgtgtctcaaattcttcaagtaagagggggca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7161878 aaagaaatgcatatctctttaagattatgattgggatgtgagcaattttaggccatgttgcacttgtttgtgtctcacattcttcaagtaagagggggca 7161779  T
Q  201 atcagtgatttctagggtctgtaagttggctagacgagacatt 243  Q
     || |||||||||||||||||||||||||| ||||||||||||    
T  7161778 ctcggtgatttctagggtctgtaagttggccagacgagacatt 7161736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 113 - 236
Target Start/End: Original strand, 3916869 - 3916992
Alignment:
Q  113 atctctttaagattatgattgggatgtgagcaattttaggccatgttgcacttgtttgtgtctcaaattcttcaagtaagagggggcaatcagtgatttc 212  Q
    ||||||||||||||||| |||||||||||| ||||||  |||||||||||||||||||||||||| ||||||||| ||||||||| ||   | |||||||    
T  3916869 atctctttaagattatgtttgggatgtgagaaattttgtgccatgttgcacttgtttgtgtctcacattcttcaattaagaggggacatcgaatgatttc 3916968  T
Q  213 tagggtctgtaagttggctagacg 236  Q
    |||||||||||| ||||| |||||    
T  3916969 tagggtctgtaatttggcaagacg 3916992  T

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Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 118 - 230
Target Start/End: Original strand, 3171534 - 3171646
Alignment:
Q  118 tttaagattatgattgggatgtgagcaattttaggccatgttgcacttgtttgtgtctcaaattcttcaagtaagagggggcaatcagtgatttctaggg 217  Q
    |||||||||||| |||| |||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||| || || |||||| ||| ||||||||    
T  3171534 tttaagattatgtttggaatgtgagcaattttgggccacgttgcacttgtttgtgtctcacattcttcaagtaaaagaggacaatcaatgacttctaggg 3171633  T
Q  218 tctgtaagttggc 230  Q
    ||||||| |||||    
T  3171634 tctgtaatttggc 3171646  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 118 - 243
Target Start/End: Original strand, 3139901 - 3140026
Alignment:
Q  118 tttaagattatgattgggatgtgagcaattttaggccatgttgcacttgtttgtgtctcaaattcttcaagtaagagggggcaatcagtgatttctaggg 217  Q
    |||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||| |||    || |||||||  |||| |||||    
T  3139901 tttaagattatgtttgggatgtgagcaatttttgcccatgttgcacttgtttgtgtctcacattcttcaattaaatcaggacaatcagcaatttgtaggg 3140000  T
Q  218 tctgtaagttggctagacgagacatt 243  Q
    ||||||| ||||| || |||| ||||    
T  3140001 tctgtaatttggcaaggcgaggcatt 3140026  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 197
Target Start/End: Original strand, 3168048 - 3168125
Alignment:
Q  120 taagattatgattgggatgtgagcaattttaggccatgttgcacttgtttgtgtctcaaattcttcaagtaagagggg 197  Q
    |||||||||| |||||||||||| |||||| | |||||||||||||||||||||| || ||||||||| |||||||||    
T  3168048 taagattatgtttgggatgtgagaaattttggaccatgttgcacttgtttgtgtcacacattcttcaactaagagggg 3168125  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 227
Target Start/End: Complemental strand, 2982632 - 2982523
Alignment:
Q  118 tttaagattatgattgggatgtgagcaattttaggccatgttgcacttgtttgtgtctcaaattcttcaagtaagagggggcaatcagtgatttctaggg 217  Q
    |||||||||||| ||||||||||||||||||||| ||| ||||||||||||| ||||||| ||| || |  |||||  || || ||| ||||||||| ||    
T  2982632 tttaagattatgtttgggatgtgagcaattttagaccaagttgcacttgtttctgtctcacattgttgagctaagaatggacattcaatgatttctaagg 2982533  T
Q  218 tctgtaagtt 227  Q
    | ||||||||    
T  2982532 tatgtaagtt 2982523  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 227
Target Start/End: Original strand, 2707759 - 2707860
Alignment:
Q  126 tatgattgggatgtgagcaattttaggccatgttgcacttgtttgtgtctcaaattcttcaagtaagagggggcaatcagtgatttctagggtctgtaag 225  Q
    |||| ||||||||||| ||||||||| ||| ||||||||||||| ||||| | |||| |||| |||||| || |||  | ||||||||| ||| ||||||    
T  2707759 tatgtttgggatgtgatcaattttagaccaagttgcacttgtttttgtctgacattcctcaattaagagtggacaactattgatttctaaggtatgtaag 2707858  T
Q  226 tt 227  Q
    ||    
T  2707859 tt 2707860  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 220
Target Start/End: Original strand, 2909011 - 2909112
Alignment:
Q  119 ttaagattatgattgggatgtgagcaattttaggccatgttgcacttgtttgtgtctcaaattcttcaagtaagagggggcaatcagtgatttctagggt 218  Q
    ||||||||||| ||||||||||||||| ||| ||||| || ||| ||||||| | |||| | |||| || ||| ||||| ||  || |||||||||||||    
T  2909011 ttaagattatgtttgggatgtgagcaactttgggccaagtagcatttgtttgcgcctcacactctttaactaacaggggacatccaatgatttctagggt 2909110  T
Q  219 ct 220  Q
    ||    
T  2909111 ct 2909112  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 3004717 - 3004665
Alignment:
Q  123 gattatgattgggatgtgagcaattttaggccatgttgcacttgtttgtgtct 175  Q
    ||||||| ||||||||||||||||||||| |||  |||||||||||| |||||    
T  3004717 gattatgtttgggatgtgagcaattttagaccaaattgcacttgtttctgtct 3004665  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 236
Target Start/End: Original strand, 3280253 - 3280344
Alignment:
Q  145 attttaggccatgttgcacttgtttgtgtctcaaattcttcaagtaagagggggcaatcagtgatttctagggtctgtaagttggctagacg 236  Q
    ||||| ||||||||| ||| ||||||||||| | ||||||||| ||| | ||| ||  || ||||||||| |||||||||||| | ||||||    
T  3280253 attttgggccatgtttcacctgtttgtgtctgacattcttcaactaaaatgggacatccaatgatttctatggtctgtaagttagttagacg 3280344  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 243
Target Start/End: Original strand, 2913962 - 2914074
Alignment:
Q  131 ttgggatgtgagcaattttaggccatgttgcacttgtttgtgtctcaaattcttcaagtaagagggggcaatcagtgatttctagggtctgtaagttggc 230  Q
    |||| |||||||||||||| |||||  || |||||| || || |||| |||||| ||  || ||||| || ||  ||||||||||||||||||| ||||     
T  2913962 ttggaatgtgagcaattttgggccaattttcacttgattctgcctcacattctttaaccaacaggggacattcgatgatttctagggtctgtaatttggt 2914061  T
Q  231 tagacgagacatt 243  Q
     ||||||| ||||    
T  2914062 gagacgaggcatt 2914074  T

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Target: scaffold0065 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 229
Target Start/End: Complemental strand, 47908 - 47802
Alignment:
Q  123 gattatgattgggatgtgagcaattttaggccatgttgcacttgtttgtgtctcaaattcttcaagtaagagggggcaatcagtgatttctagggtctgt 222  Q
    ||||||| |||| ||||||| |||||| ||| ||||||||||||||||||||||| | ||| ||| ||||| | | || | | |||||||||||||||||    
T  47908 gattatgtttggaatgtgagaaattttgggcaatgttgcacttgtttgtgtctcacactctgcaaataagaagcgacatttaatgatttctagggtctgt 47809  T
Q  223 aagttgg 229  Q
    || ||||    
T  47808 aatttgg 47802  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 244
Target Start/End: Original strand, 10753402 - 10753526
Alignment:
Q  120 taagattatgattgggatgtgagcaattttaggccatgttgcacttgtttgtgtctcaaattcttcaagtaagagggggcaatcagtgatttctagggtc 219  Q
    ||||| |||| ||||||||||||| ||||||||||  ||||||||||||| | ||  | |||| |||| |||||| || || ||| ||||||||| |||     
T  10753402 taagactatgtttgggatgtgagcgattttaggcccggttgcacttgtttctctcaaacattcctcaattaagagtggacattcaatgatttctaaggtt 10753501  T
Q  220 tgtaagttggctagacgagacattt 244  Q
    | ||||||||  ||||||| |||||    
T  10753502 tttaagttggtaagacgaggcattt 10753526  T

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