View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7963_high_8 (Length: 423)
Name: NF7963_high_8
Description: NF7963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7963_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 1624187 - 1623781
Alignment:
| Q |
1 |
accacttatagctctgcaacagcaggtgatttatacttcatttactgttttatgttcttgttataagagaaaaaacaatattcactgcttgaaaaagtcg |
100 |
Q |
| |
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||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1624187 |
accacttatagctctgcaacagcaggtgaattatatttcatttcctgttttatgttcttgttataagagaaaaa-caatattcactgcttgaaaaagtcg |
1624089 |
T |
|
| Q |
101 |
aactaacaacgaaagatagagactggaaaaataaaatcaatctacatgtatctttgtgtaaatcagtgctgaaaagccctatttagttttttctagtttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1624088 |
aactaacaacgaaagatagagactggaaaaataaaatcaatctacatgtatctttgtgtaaatcagtgttgaaaagccctatttagttttttctagtttt |
1623989 |
T |
|
| Q |
201 |
aaagccctaaaattcaatagtaaatcagtgttgaaaattagatgtcacggaaatgtgctctttatatcatagctatatatgatattcataagtgtctaat |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
1623988 |
aaagccctaaaattcaatagtaaatcagtgttgaaaattagatgtcatggaaatgtgctctttatatcatagctatatatgatattcataattctctaat |
1623889 |
T |
|
| Q |
301 |
ggctttcttgcaacttgtctagcacgaacactttagagtttagaatgttatttatagtttctaatttttacatatttctcttgaatcttttaaatttagg |
400 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1623888 |
ggctttcttgcaacttgtctaacacgaacactttagagtttagaatgttatttatagtttctaatttttacatatttctcttgaatcttttaaattcagg |
1623789 |
T |
|
| Q |
401 |
cattgatg |
408 |
Q |
| |
|
|||||||| |
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|
| T |
1623788 |
cattgatg |
1623781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 197 - 408
Target Start/End: Complemental strand, 1606873 - 1606659
Alignment:
| Q |
197 |
ttttaaagccctaaaattcaatagtaaatcagtgttgaaaattagatgtcacggaaatgtgctctttatatcatagctatatatgatattcataagtgtc |
296 |
Q |
| |
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||||||||||||||||||||||| |||||||||||| |||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
1606873 |
ttttaaagccctaaaattcaatactaaatcagtgtttaaaactagttgtcacggaaatgtgctctttatatcataggtatatatgatattcatactggtc |
1606774 |
T |
|
| Q |
297 |
taatggctttcttgcaacttgtctagcacgaacactt--tagagtttagaatgttatttatagtttctaa-tttttacatatttctcttgaatcttttaa |
393 |
Q |
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|||||||||||||||||||| | |||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||| ||||| |
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| T |
1606773 |
taatggctttcttgcaacttatgtagcacgaacactttatagagtttagattgttatttatagtttctaattttttacatatttctcttggatcatttaa |
1606674 |
T |
|
| Q |
394 |
atttaggcattgatg |
408 |
Q |
| |
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||||||| ||||||| |
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| T |
1606673 |
atttaggtattgatg |
1606659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 1607166 - 1607056
Alignment:
| Q |
1 |
accacttatagctctgcaacagcaggtgatttatacttcatttactgttttatgttcttgttataagagaaaaaacaatattcactgcttgaaaaagtcg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
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|
| T |
1607166 |
accacttatagctctgcaacagcaggtgaattatatttcatttcctgttttatgttcttgttataagaga-aaaacaatattcactgctagaaaaagttt |
1607068 |
T |
|
| Q |
101 |
aactaacaacga |
112 |
Q |
| |
|
|||||||||||| |
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|
| T |
1607067 |
aactaacaacga |
1607056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 1630162 - 1630128
Alignment:
| Q |
1 |
accacttatagctctgcaacagcaggtgatttata |
35 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
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|
| T |
1630162 |
accacttatagctctgcaacagcaggtgagttata |
1630128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 320 - 408
Target Start/End: Complemental strand, 18781563 - 18781475
Alignment:
| Q |
320 |
tagcacgaacactttagagtttagaatgttatttatagtttctaatttttacatatttctcttgaatcttttaaatttaggcattgatg |
408 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
18781563 |
tagcacggacactttagagtttagattgttatttatagtttctaatttttacatatttctcttgaatcttttaaattcaggcattgatg |
18781475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 18785213 - 18785103
Alignment:
| Q |
1 |
accacttatagctctgcaacagcaggtgatttatacttcatttactgttttatgttcttgttataagagaaaaaacaatattcactgcttgaaaaagtcg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||| ||||||| |||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
18785213 |
accacttatagctctgcaacagcaggtgaattataattcatttcctgttttgtgttcttgttataagaga-aaaacaatattcactgctagaaaaagttt |
18785115 |
T |
|
| Q |
101 |
aactaacaacga |
112 |
Q |
| |
|
|||||||||||| |
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|
| T |
18785114 |
aactaacaacga |
18785103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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