View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7963_high_9 (Length: 420)
Name: NF7963_high_9
Description: NF7963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7963_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 12073342 - 12073577
Alignment:
| Q |
11 |
ttatacttaaagtagcatgatggtttcaaagtgaataacataaaatagaaagttatctttactctaacagtagcatgtattttgataccccaaaatggct |
110 |
Q |
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| T |
12073342 |
ttatacttaaagtagcatgatggtttcaaagtgaataacataaaacagaaagttatctttactctaacagtagcatgtattttgataccccaaaatggct |
12073441 |
T |
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| Q |
111 |
tacactgttcaaaatatcaaattgtatgacgaaagtacacattcccatcaaatctattcgcgtagcccgatcaaatgtgacaccctaaccagcttgatct |
210 |
Q |
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| T |
12073442 |
tacactgttcaaaatatcaaattgtatgacgaaagtacacattcccatcaaatctattcgcgtagcccgatcaaatgtgacaccctaaccagcttgatct |
12073541 |
T |
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| Q |
211 |
attaatttgagaaacaaacatgtaatgcaaaactgg |
246 |
Q |
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| T |
12073542 |
attaatttgagaaacaaacatgtaatgcaaaactgg |
12073577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 239 - 403
Target Start/End: Original strand, 12073621 - 12073783
Alignment:
| Q |
239 |
aaaactggaaattaaaacaatgattattatgcagaaaaaagacatcataaaccaaccattcaagcttagcaaagccaacacggcctcttcatggttgttc |
338 |
Q |
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| T |
12073621 |
aaaactggaaattaaaacaatgattattatgcagaaaaaagacatcataaaccaaccattcaagcttagcaaagccaacacggc--cttcaaggttgttc |
12073718 |
T |
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| Q |
339 |
catttatcagtagcgtggtttatgttggtgcgagatttttctagtaggattatacttttctaatt |
403 |
Q |
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| T |
12073719 |
catttatcagtagcgtggtttatgttggtgcgagatttttccagtaggattgtacttttctaatt |
12073783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 335 - 403
Target Start/End: Original strand, 12046509 - 12046578
Alignment:
| Q |
335 |
gttccatttatcagtagcgtggtttatgttggtgcgaga-tttttctagtaggattatacttttctaatt |
403 |
Q |
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| T |
12046509 |
gttccatttatcagtaacgtagtttatgttggtgcgagattttttccagtaggattgtaattttctaatt |
12046578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 334 - 378
Target Start/End: Original strand, 12066151 - 12066195
Alignment:
| Q |
334 |
tgttccatttatcagtagcgtggtttatgttggtgcgagattttt |
378 |
Q |
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| T |
12066151 |
tgttccatttttcagaagcgtggtttatgttggtgcgaggttttt |
12066195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 334 - 377
Target Start/End: Original strand, 12050706 - 12050749
Alignment:
| Q |
334 |
tgttccatttatcagtagcgtggtttatgttggtgcgagatttt |
377 |
Q |
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| T |
12050706 |
tgttccatttttcagtagcgtggtttatgttcgtgcaagatttt |
12050749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 336 - 379
Target Start/End: Original strand, 12053216 - 12053259
Alignment:
| Q |
336 |
ttccatttatcagtagcgtggtttatgttggtgcgagatttttc |
379 |
Q |
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| T |
12053216 |
ttccatttttcagtggcatggtttatgttggtgcgagatttttc |
12053259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 334 - 389
Target Start/End: Original strand, 12058064 - 12058119
Alignment:
| Q |
334 |
tgttccatttatcagtagcgtggtttatgttggtgcgagatttttctagtaggatt |
389 |
Q |
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| T |
12058064 |
tgttccatttatcactattgtggtttatgttggtgctagaattttccagtaggatt |
12058119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 239 - 308
Target Start/End: Original strand, 12806988 - 12807057
Alignment:
| Q |
239 |
aaaactggaaattaaaacaatgattattatgcagaaaaaagacatcataaaccaaccattcaagcttagc |
308 |
Q |
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| T |
12806988 |
aaaactggaaattaaaacaatgattactatgcagaaaaaagacattataaaccaactgttcaagcttagc |
12807057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 239 - 308
Target Start/End: Original strand, 14457904 - 14457973
Alignment:
| Q |
239 |
aaaactggaaattaaaacaatgattattatgcagaaaaaagacatcataaaccaaccattcaagcttagc |
308 |
Q |
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| T |
14457904 |
aaaactggaaattaaaacaatgattactatgcagaagaaagacattataaaccaaccgttcaagcttagc |
14457973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 239 - 308
Target Start/End: Complemental strand, 50291138 - 50291069
Alignment:
| Q |
239 |
aaaactggaaattaaaacaatgattattatgcagaaaaaagacatcataaaccaaccattcaagcttagc |
308 |
Q |
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| T |
50291138 |
aaaactgaaaattaaaaagatgattactatgcagaaaaaagacattataaaccaaccgttcaagcttagc |
50291069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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