View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7963_low_16 (Length: 335)
Name: NF7963_low_16
Description: NF7963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7963_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 28209526 - 28209839
Alignment:
| Q |
1 |
gtttccactaacatacacgtcaaataccatctcatatgccttgatgtctgattttaaatcatctgtagcatatacgttaacattttcatcatttgttgtc |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28209526 |
gtttccactaacatacacgtcaaacaccatctcatatgccttgatgtctgattttaaatcatctgtagcatatacgttaacattttcatcatttgttgtc |
28209625 |
T |
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| Q |
101 |
attgtcatatccaaatttgtgtcatttttaggcacttgagagaatcctttaactttagtcctacctaataagacatcattactgattacctctacaaaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28209626 |
attgtcatatccaaatttgtgtcatttttaggcacctgagagaatcctttaactttagtcctacctaataagacatcattactgattacctctacaaaaa |
28209725 |
T |
|
| Q |
201 |
gaggaccatacaaaagttttaactcttcattcttgtttgagaatcttaaacccaaatttattattgcatccattttttgtgagctagaatccacttgtaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28209726 |
gaggaccatacaaaagttttaactcttcattcttgtttgagaatcttaaacccagatttattattgcatccattttttgtgagctagaatccacttgtaa |
28209825 |
T |
|
| Q |
301 |
ctttgtcatgttga |
314 |
Q |
| |
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|||||||||||||| |
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| T |
28209826 |
ctttgtcatgttga |
28209839 |
T |
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