View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7963_low_17 (Length: 320)
Name: NF7963_low_17
Description: NF7963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7963_low_17 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 17 - 320
Target Start/End: Complemental strand, 325898 - 325595
Alignment:
| Q |
17 |
atataacctaacagattaacctaaataacatataacctaacagattaatgaaaacatactactcataaccatgccctaaatatgtgcaaactcaacaatt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
325898 |
atataacctaacagattaacctaaataacatataacctaacagattaatgaaaacatactactcataaccatgccctaaatacgtgcaagctcaacaatt |
325799 |
T |
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| Q |
117 |
caaactctgttagataacagattggctaaattgagtgactacctttaatttcatagctcaatttatcagttcataagtttgggtgatcaaattctcagac |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
325798 |
caaactctgttagataacagattggctaaattgagtgactacctttaatttcatatctcaatttatcatttcataagtttgggtgatcaaattctcagac |
325699 |
T |
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| Q |
217 |
ctcgacaacttcaataactaaagtattgattcactcgattcaatacactaatccctttactcttacctaataaatattacaaactcttaacggaattgta |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
325698 |
ctcgacaacttcaataactaaagtattgattcactcgattcaatacactaatccctttactcttacctaataaatattacaaactcttaacggaattata |
325599 |
T |
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| Q |
317 |
atta |
320 |
Q |
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|||| |
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| T |
325598 |
atta |
325595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 123 - 265
Target Start/End: Complemental strand, 324268 - 324124
Alignment:
| Q |
123 |
ctgttagataacagattggctaaattgagtgactacctttaatttcatagctcaatttatcagttcataagtttgggtgatcaaat--tctcagacctcg |
220 |
Q |
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|||||| |||| ||||||| |||||||| | || | |||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||| |
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| T |
324268 |
ctgttaaataaaagattggttaaattgattcacagcttttaatttcatagctcaatttatctgttcataaatttgggtgatcaaattctctcagacctct |
324169 |
T |
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| Q |
221 |
acaacttcaataactaaagtattgattcactcgattcaatacact |
265 |
Q |
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|||| ||||| ||||||| |||||| |||||| ||| ||| |||| |
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| T |
324168 |
acaatttcaagaactaaaatattgactcactctattgaatgcact |
324124 |
T |
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