View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7963_low_18 (Length: 294)

Name: NF7963_low_18
Description: NF7963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7963_low_18
NF7963_low_18
[»] chr7 (6 HSPs)
chr7 (1-257)||(307017-307273)
chr7 (1-209)||(2826893-2827101)
chr7 (167-209)||(39719824-39719866)
chr7 (167-209)||(46211836-46211878)
chr7 (167-209)||(48609265-48609307)
chr7 (167-209)||(758774-758816)
[»] scaffold0049 (1 HSPs)
scaffold0049 (9-209)||(15216-15411)
[»] chr2 (1 HSPs)
chr2 (1-209)||(5382323-5382526)
[»] chr4 (2 HSPs)
chr4 (1-209)||(13768742-13768938)
chr4 (167-208)||(43892682-43892723)
[»] chr5 (3 HSPs)
chr5 (1-209)||(39685315-39685531)
chr5 (167-209)||(13517442-13517484)
chr5 (167-209)||(17769136-17769178)
[»] chr8 (2 HSPs)
chr8 (167-209)||(4072387-4072429)
chr8 (167-209)||(41323341-41323383)
[»] chr6 (2 HSPs)
chr6 (167-209)||(29363704-29363746)
chr6 (167-209)||(34729719-34729761)
[»] chr3 (3 HSPs)
chr3 (167-209)||(46823748-46823790)
chr3 (168-209)||(17653148-17653189)
chr3 (167-209)||(21295876-21295918)
[»] chr1 (2 HSPs)
chr1 (167-209)||(10620007-10620049)
chr1 (167-209)||(15757620-15757662)


Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 307017 - 307273
Alignment:
Q  1 gaattgagatcaatcgaatctaattatgttgctacttgcttgatgttagttgttgctgtttaggtcaccatgttgtttgtggctcttctcttctattcca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  307017 gaattgagatcaatcgaatctaattatgttgctacttgcttgatgttagttgttgctgtttaggtcaccatgttgtttgtggctcttctcttctattcca 307116  T
Q  101 ttgtactctgtaattgtattgtgatcgtgaaaagtgaaaggttaaagccatcattgttttattaattgtgtggtgctggtgggttgagagtgtgtgggcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  307117 ttgtactctgtaattgtattgtgatcgtgaaaagtgaaaggttaaagccatcattgttttattaattgtgtggtgctggtgggttgagagtgtgtgggcc 307216  T
Q  201 tacaattgttattaactgttattaactgaatcttcatacatatctgggttataagta 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  307217 tacaattgttattaactgttattaactgaatcttcatacatatctgggttataagta 307273  T

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Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 2827101 - 2826893
Alignment:
Q  1 gaattgagatcaatcgaatctaattatgttgctacttgcttgatgttagttgttgctgtttaggtcaccatgttgtttgtggctcttctcttctattcca 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  2827101 gaattgagatcaatcgaatctaattatgttgctacttgtttgatgttagttgttgttgtgtaggtcaccatgttgtttgtggctcttctcttctattcca 2827002  T
Q  101 ttgtactctgtaattgtattgtgatcgtgaaaagtgaaaggttaaagccatcattgttttattaattgtgtggtgctggtgggttgagagtgtgtgggcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2827001 ttgtactctgtaattgtattgtgatcgtgaaaagtgaaaggttaaagccatcattgttttattaattgtgtggtgctggtgggttgagagtgtgtaggcc 2826902  T
Q  201 tacaattgt 209  Q
    |||||||||    
T  2826901 tacaattgt 2826893  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 209
Target Start/End: Complemental strand, 39719866 - 39719824
Alignment:
Q  167 tgtgtggtgctggtgggttgagagtgtgtgggcctacaattgt 209  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  39719866 tgtgtggtgctggtgggctgagagtgtgtgggcctacaattgt 39719824  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 209
Target Start/End: Original strand, 46211836 - 46211878
Alignment:
Q  167 tgtgtggtgctggtgggttgagagtgtgtgggcctacaattgt 209  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  46211836 tgtgtggtgctggtgggctgagagtgtgtgggcctacaattgt 46211878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 209
Target Start/End: Original strand, 48609265 - 48609307
Alignment:
Q  167 tgtgtggtgctggtgggttgagagtgtgtgggcctacaattgt 209  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  48609265 tgtgtggtgctggtgggttgagagtgtgtgagcctacaattgt 48609307  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 209
Target Start/End: Complemental strand, 758816 - 758774
Alignment:
Q  167 tgtgtggtgctggtgggttgagagtgtgtgggcctacaattgt 209  Q
    ||||| ||||||||||| |||||||||||||||||||| ||||    
T  758816 tgtgttgtgctggtgggctgagagtgtgtgggcctacatttgt 758774  T

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Target: scaffold0049 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 9 - 209
Target Start/End: Complemental strand, 15411 - 15216
Alignment:
Q  9 atcaatcgaatctaattatgttgctacttgcttgatgttagttgttgctgtttaggtcaccatgttgtttgtggctcttctcttctattccattgtactc 108  Q
    ||||||||||||||||||||||| |       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||      
T  15411 atcaatcgaatctaattatgttgtt-------tgatgttagttgttgctgtttaggtcaccatgttgtttgtggctcttctcttctattccatcgtaccg 15319  T
Q  109 tgtaattgtattgtgatcgtgaaaagtgaaaggtt--aaagccatcattgttttattaattgtgtggtgctggtgggttgagagtgtgtgggcctacaat 206  Q
    ||||||||||||||||| ||||||||||||| |||  |||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  15318 tgtaattgtattgtgattgtgaaaagtgaaaagttaaaaagtcatccttgttttattaattgtgtggtgctggtgggctgagagtgtgtgggcctacaat 15219  T

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Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 5382323 - 5382526
Alignment:
Q  1 gaattgagatcaatcgaatctaattatgttgctacttgcttgatgttagttgttgctgtttaggtcaccatgttgtttgtggctcttctcttctattcca 100  Q
    ||||||||||||||||||||||||||||||| |       ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  5382323 gaattgagatcaatcgaatctaattatgttgtt-------tgatgttagttgttgctgtttaggtcaccatgtcgtttgtgactcttctcttctattcca 5382415  T
Q  101 ttgtactctgtaattgtattgtgatcgtgaaaagtgaaaggtt--aaagccatcattgttttattaattgtgtggtgctggtgggttgagagtgtgtggg 198  Q
    | ||| | ||||||||||||||||| ||||||| ||||| |||  |||| |||| ||||||||||||||||||| |||||||||| |||||||||||| |    
T  5382416 tcgtattgtgtaattgtattgtgattgtgaaaaatgaaaagttaaaaagtcatccttgttttattaattgtgtgatgctggtgggctgagagtgtgtgag 5382515  T
Q  199 cctacaattgt 209  Q
    |||||||||||    
T  5382516 cctacaattgt 5382526  T

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Target: chr4 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 13768938 - 13768742
Alignment:
Q  1 gaattgagatcaatcgaatctaattatgttgctacttgcttgatgttagttgttgctgtttaggtcaccatgttgtttgtggctcttctcttctattcca 100  Q
    |||||||||||||||||||||||||||||||||       ||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||    
T  13768938 gaattgagatcaatcgaatctaattatgttgct-------tgatgttagttgttgctgtttagatcaccatgtcgtttgtggcgcttctcttctattcca 13768846  T
Q  101 ttgtactctgtaattgtattgtgatcgtgaaaagtgaaaggttaaa--gccatcattgttttattaattgtgtggtgctggtgggttgagagtgtgtggg 198  Q
     ||||       ||||||||||||| ||||||||| ||| ||||||  |||||| |||||||||||||||||||||||| ||||| |||||||||||||     
T  13768845 gtgta-------attgtattgtgattgtgaaaagtaaaaagttaaaaagccatccttgttttattaattgtgtggtgcttgtgggctgagagtgtgtgga 13768753  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 208
Target Start/End: Original strand, 43892682 - 43892723
Alignment:
Q  167 tgtgtggtgctggtgggttgagagtgtgtgggcctacaattg 208  Q
    ||||||||||||||||| ||||| ||| ||||||||||||||    
T  43892682 tgtgtggtgctggtgggctgagaatgtatgggcctacaattg 43892723  T

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Target: chr5 (Bit Score: 82; Significance: 9e-39; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 39685315 - 39685531
Alignment:
Q  1 gaattgagatcaatcgaatctaattatgttgctacttgcttgatgttagttgttgctgtttaggtcaccatgttgtttgtggctcttctcttctattcca 100  Q
    ||||||||||||||||||||||||||||||||       |||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||    
T  39685315 gaattgagatcaatcgaatctaattatgttgc-------ttgatgttagttgttgatgtttaggtcaccatgtcgtttgtggctcttctcttccattcca 39685407  T
Q  101 ttgtactctgtaattgtattgtgatcgtgaaaagtgaaaggt----------------taaagccatcattgttttattaattgtgtggtgctggtgggt 184  Q
     |||| | ||||| ||||||||||| ||||||||||||| ||                 |||| |||| ||||||||||||||||||||||||||||||     
T  39685408 -tgtattgtgtaactgtattgtgattgtgaaaagtgaaaagtgaaaagtgaaaagttaaaaagtcatccttgttttattaattgtgtggtgctggtgggc 39685506  T
Q  185 tgagagtgtgtgggcctacaattgt 209  Q
    ||||||| |||||| ||||||||||    
T  39685507 tgagagtttgtgggtctacaattgt 39685531  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 209
Target Start/End: Complemental strand, 13517484 - 13517442
Alignment:
Q  167 tgtgtggtgctggtgggttgagagtgtgtgggcctacaattgt 209  Q
    ||||||||||||||||| ||||||||||||| |||||||||||    
T  13517484 tgtgtggtgctggtgggctgagagtgtgtggacctacaattgt 13517442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 209
Target Start/End: Original strand, 17769136 - 17769178
Alignment:
Q  167 tgtgtggtgctggtgggttgagagtgtgtgggcctacaattgt 209  Q
    ||||||||||||||||| |||||| ||||||||||||||||||    
T  17769136 tgtgtggtgctggtgggctgagagcgtgtgggcctacaattgt 17769178  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 209
Target Start/End: Original strand, 4072387 - 4072429
Alignment:
Q  167 tgtgtggtgctggtgggttgagagtgtgtgggcctacaattgt 209  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  4072387 tgtgtggtgctggtgggctgagagtgtgtgggcctacaattgt 4072429  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 209
Target Start/End: Original strand, 41323341 - 41323383
Alignment:
Q  167 tgtgtggtgctggtgggttgagagtgtgtgggcctacaattgt 209  Q
    ||||||||||||||||| ||||||||||||| |||||||||||    
T  41323341 tgtgtggtgctggtgggctgagagtgtgtggacctacaattgt 41323383  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 209
Target Start/End: Original strand, 29363704 - 29363746
Alignment:
Q  167 tgtgtggtgctggtgggttgagagtgtgtgggcctacaattgt 209  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  29363704 tgtgtggtgctggtgggctgagagtgtgtgggcctacaattgt 29363746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 209
Target Start/End: Complemental strand, 34729761 - 34729719
Alignment:
Q  167 tgtgtggtgctggtgggttgagagtgtgtgggcctacaattgt 209  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  34729761 tgtgtggtgctggtgggttgagagtgtgtgagcctacaattgt 34729719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 209
Target Start/End: Complemental strand, 46823790 - 46823748
Alignment:
Q  167 tgtgtggtgctggtgggttgagagtgtgtgggcctacaattgt 209  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  46823790 tgtgtggtgctggtgggctgagagtgtgtgggcctacaattgt 46823748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 209
Target Start/End: Original strand, 17653148 - 17653189
Alignment:
Q  168 gtgtggtgctggtgggttgagagtgtgtgggcctacaattgt 209  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  17653148 gtgtggtgctggtgggttgaaagtgtgtgggcctacaattgt 17653189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 209
Target Start/End: Complemental strand, 21295918 - 21295876
Alignment:
Q  167 tgtgtggtgctggtgggttgagagtgtgtgggcctacaattgt 209  Q
    ||||||||||||||||| |||||| ||||||||||||||||||    
T  21295918 tgtgtggtgctggtgggctgagagcgtgtgggcctacaattgt 21295876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 209
Target Start/End: Complemental strand, 10620049 - 10620007
Alignment:
Q  167 tgtgtggtgctggtgggttgagagtgtgtgggcctacaattgt 209  Q
    ||||||||||||||||| |||||| ||||||||||||||||||    
T  10620049 tgtgtggtgctggtgggctgagagcgtgtgggcctacaattgt 10620007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 209
Target Start/End: Complemental strand, 15757662 - 15757620
Alignment:
Q  167 tgtgtggtgctggtgggttgagagtgtgtgggcctacaattgt 209  Q
    ||||||||||||||||| |||||| ||||||||||||||||||    
T  15757662 tgtgtggtgctggtgggctgagagcgtgtgggcctacaattgt 15757620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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