View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7963_low_19 (Length: 291)
Name: NF7963_low_19
Description: NF7963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7963_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 2306601 - 2306869
Alignment:
| Q |
18 |
gtaaatagattagataatttataactaaaaatttatagcaaaacttagttataatatactttcaagggtgcttgcttagagatttaaaaggagagttcaa |
117 |
Q |
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| T |
2306601 |
gtaaatagattagataatttataactaaaaatttatagcaaaacttagttataatatattttcaagggtgcttgcttagagatttaaaaggagagttcaa |
2306700 |
T |
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| Q |
118 |
tggtggactttcaccatttttaataaaataacgaattttgttaagaaaataaataaagtgggagagaaaacgatgaattttcaacttcaaacatttgtat |
217 |
Q |
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| T |
2306701 |
tggtggactttcaccatttttaataaaataacgaattttgttaagaaaataaataaagtgggagagaaaacgatgaattttcaacttcaaacatttgtat |
2306800 |
T |
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| Q |
218 |
tgagttccatattagaaacactcatatttgtaannnnnnnngggtgatgtccgggtacgaactccaaac |
286 |
Q |
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| T |
2306801 |
tgagttccatattagaaacactcatatttgtaattttttttgggtgatgtccggatacgaactccaaac |
2306869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 2338960 - 2339006
Alignment:
| Q |
17 |
agtaaatagattagataatttataactaaaaatttatagcaaaactt |
63 |
Q |
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|||||||| ||||||||||||||||||||||||| || | ||||||| |
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| T |
2338960 |
agtaaataaattagataatttataactaaaaattgatcgtaaaactt |
2339006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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