View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7963_low_2 (Length: 644)
Name: NF7963_low_2
Description: NF7963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7963_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 620; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 12 - 631
Target Start/End: Original strand, 44856303 - 44856922
Alignment:
| Q |
12 |
catagacataaaaaccaggtgcaaccataatcctaaccatgtttggtaccaaccttgaagacttgtccccacccatatcttccatgtaaacagaatcaaa |
111 |
Q |
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| T |
44856303 |
catagacataaaaaccaggtgcaaccataatcctaaccatgtttggtaccaaccttgaagacttgtccccacccatatcttccatgtaaacagaatcaaa |
44856402 |
T |
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| Q |
112 |
gttgactcctttatcaactctaaatatttgtaaacttggatgaactgaattagccaacaaatgaaccatccaaacactctttgaagcaacaaagaaagct |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44856403 |
gttgactcctttatcaactctaaatatttgtaaacttggatgaactgaattagccaacaaatgaaccatccaaacactctttgaagcaacaaagaaagct |
44856502 |
T |
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| Q |
212 |
tgcaatagtggttcagaccaagccctattccaacccaacatagcaacaatttcactcatttttctatcacaaaatctactaaaatcttcactaaaatgtc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44856503 |
tgcaatagtggttcagaccaagccctattccaacccaacatagcaacaatttcactcatttttctatcacaaaatctactaaaatcttcactaaaatgtc |
44856602 |
T |
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| Q |
312 |
ttgtccctttgctcaaaacttcatcccaagtcaacccatgtatcatgttgaatgaagcaaaacttgattcacacctttccatagggttcaatatcctatt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44856603 |
ttgtccctttgctcaaaacttcatcccaagtcaacccatgtatcatgttgaatgaagcaaaacttgattcacacctttccatagggttcaatatcctatt |
44856702 |
T |
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| Q |
412 |
acaagcattcttttgaaaccctattgactcaaaatcctcaaaaaatgtcttgttcaaaagtgcttccaagtaaaaaagcaaacttcttggattctttgaa |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44856703 |
acaagcattcttttgaaaccctattgactcaaaatcctcaaaaaatgtcttgttcaaaagtgcttccaagtaaaaaagcaaacttcttggattctttgaa |
44856802 |
T |
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| Q |
512 |
aaagatatttttatatcataaggttgtaaaagtaaagaaactttttcatacactttgcttcctgtgtgtctaagttgcattgttaatgaacgacttagaa |
611 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44856803 |
aaagatatttttatatcataaggttgtaaaagtaaagaaactttttcatacactttgcttcctgtgtgtctaagttgcattgttaatgaacgacttagaa |
44856902 |
T |
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| Q |
612 |
gtctcactgaagatcttgct |
631 |
Q |
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| T |
44856903 |
gtctcactgaagatcttgct |
44856922 |
T |
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