View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7963_low_20 (Length: 289)
Name: NF7963_low_20
Description: NF7963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7963_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 25 - 182
Target Start/End: Original strand, 2897976 - 2898133
Alignment:
| Q |
25 |
gagggtatatccggttcaagccaaaaaatcttctcatttaaaaccttccttgcatacactatttttaggagtaaagcttacatagtcgcaacctgaagtg |
124 |
Q |
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| T |
2897976 |
gagggtatacccggttcaagccaaaaaatcttctcatttaaaaccttctttgcatacactatttttaggagtaaattttacatagtcgcaacctgacgtg |
2898075 |
T |
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| Q |
125 |
aaaaatatttaggcacaaacacaaataaaaaacaattaagaaggaaataatttagtca |
182 |
Q |
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| T |
2898076 |
aaaaatatttaggcacaaacacaaataaaaaacaattaagaaggaaataatttagtca |
2898133 |
T |
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