View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7963_low_24 (Length: 275)
Name: NF7963_low_24
Description: NF7963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7963_low_24 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 48569638 - 48569420
Alignment:
| Q |
19 |
gatgtaattaaataaactcatttgaaatacatttaactaaacagccgtcatcagctaatgataattttgttaaaaaagtctgcctgctcgggaaaatact |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48569638 |
gatgtaattaaataaactcatttgaaatacatttaaccaaacagccgtcatcagccaatgataattttgttaaaaaagtctgcctgctcgggaaaatact |
48569539 |
T |
|
| Q |
119 |
ccatcaattcatcctctgtcacccaaacaaaatcctcgcattttctaaagtcaaacttgtttttagcaattacttgggacttgatcatgacgaagaattt |
218 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
48569538 |
ccatcaattcatcctttgtcacccaaacaaaatcctcgcattttctaaagtcaaacttgtttttagcaattacttgggact------tgaagaagaattt |
48569445 |
T |
|
| Q |
219 |
ctatcggaagatttcagcaaaggaa |
243 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
48569444 |
atatcggaagatttcagcaaaggaa |
48569420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 65 - 261
Target Start/End: Original strand, 10821422 - 10821612
Alignment:
| Q |
65 |
gtcatcagctaatgataattttgttaaaaaagtctgcctgctcgggaaaatactccatcaattcatcctctgtcacccaaacaaaatcctcgcattttct |
164 |
Q |
| |
|
|||||||||||||||| |||||||| ||||| || || ||||| ||||||||||| ||||||||||||| |||||||||||||| ||||||||||| | |
|
|
| T |
10821422 |
gtcatcagctaatgatcattttgtttaaaaactcagcttgctctggaaaatactcaatcaattcatccttagtcacccaaacaaagtcctcgcatttgcc |
10821521 |
T |
|
| Q |
165 |
aaagtcaaacttgtttttagcaattacttgggacttgatcatgacgaagaatttctatcggaagatttcagcaaaggaaaaaatgagcaagtataat |
261 |
Q |
| |
|
|| ||| ||||||||||||||||||||||| || | ||| ||||||||||| | |||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
10821522 |
aatgtcgaacttgtttttagcaattacttgtgatt------tgaagaagaatttctgacagaagatttaagcaaaggaaagaatgagcaagtataat |
10821612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 65 - 194
Target Start/End: Complemental strand, 36145966 - 36145837
Alignment:
| Q |
65 |
gtcatcagctaatgataattttgttaaaaaagtctgcctgctcgggaaaatactccatcaattcatcctctgtcacccaaacaaaatcctcgcattttct |
164 |
Q |
| |
|
|||||||||||||||| |||||||| ||||| || || ||||| ||||||||||||||||||||||||| |||||||||||||| ||||| | ||| | |
|
|
| T |
36145966 |
gtcatcagctaatgatcattttgtttaaaaactcagcttgctcaggaaaatactccatcaattcatccttagtcacccaaacaaagtcctcacctttgcc |
36145867 |
T |
|
| Q |
165 |
aaagtcaaacttgtttttagcaattacttg |
194 |
Q |
| |
|
|| ||| ||||||||||||||||||||||| |
|
|
| T |
36145866 |
aatgtcgaacttgtttttagcaattacttg |
36145837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University