View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7963_low_29 (Length: 259)

Name: NF7963_low_29
Description: NF7963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7963_low_29
NF7963_low_29
[»] chr5 (1 HSPs)
chr5 (16-242)||(28667543-28667776)
[»] chr8 (3 HSPs)
chr8 (143-240)||(17111143-17111240)
chr8 (32-77)||(17705212-17705257)
chr8 (30-77)||(23869334-23869381)
[»] chr1 (1 HSPs)
chr1 (36-77)||(25276207-25276248)
[»] chr2 (1 HSPs)
chr2 (26-70)||(26798038-26798082)


Alignment Details
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 28667776 - 28667543
Alignment:
Q  16 atacgacgagaaaatctatgtccaccagcacccgcgtgtaatggccaaaggtgcgtttctga-------catcgataatgagaggtgcgcctaatgctcc 108  Q
    |||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||       |||||||||||||||||||||||||||||||    
T  28667776 atacaacgagaaaatctatgtccactagcacccgcgtgtaatggccgaaggtgcgtttctgagttgcggcatcgataatgagaggtgcgcctaatgctcc 28667677  T
Q  109 agcatcttccatgagtgttccgtttaaccatttctcatgtggtaagtccagaagttgaatccaaacctacgcatgtgtgagacactgaaagtacttgttg 208  Q
    ||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||    
T  28667676 agcatcttccatgagtgctccgtttaaccattactcctgtggtaagtccagaagttgaatccaaacctgcgcatgtgtgagacgctgagagtacttgttg 28667577  T
Q  209 aaatccttggctcatctagaaagcctcaacagtc 242  Q
    ||||||||||| ||||||||||||||||||||||    
T  28667576 aaatccttggcccatctagaaagcctcaacagtc 28667543  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 240
Target Start/End: Complemental strand, 17111240 - 17111143
Alignment:
Q  143 tcatgtggtaagtccagaagttgaatccaaacctacgcatgtgtgagacactgaaagtacttgttgaaatccttggctcatctagaaagcctcaacag 240  Q
    |||||||| |||||||||||  | ||||||||||  ||||||||||||| |||| |||| ||||| ||||||||||  ||||  ||||||| ||||||    
T  17111240 tcatgtggcaagtccagaagccggatccaaacctgtgcatgtgtgagacgctgagagtatttgttaaaatccttggaccatcgggaaagccgcaacag 17111143  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 17705257 - 17705212
Alignment:
Q  32 tatgtccaccagcacccgcgtgtaatggccaaaggtgcgtttctga 77  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||    
T  17705257 tatgtccaccagcacccgcgcataatggccaaaggtgcgtttctga 17705212  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 23869334 - 23869381
Alignment:
Q  30 tctatgtccaccagcacccgcgtgtaatggccaaaggtgcgtttctga 77  Q
    ||||| |||||||||||||||   ||||||||||||||||||||||||    
T  23869334 tctatatccaccagcacccgcacataatggccaaaggtgcgtttctga 23869381  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 25276207 - 25276248
Alignment:
Q  36 tccaccagcacccgcgtgtaatggccaaaggtgcgtttctga 77  Q
    |||||||||||| |||||||||||||||| ||||||||||||    
T  25276207 tccaccagcacctgcgtgtaatggccaaatgtgcgtttctga 25276248  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 26798038 - 26798082
Alignment:
Q  26 aaaatctatgtccaccagcacccgcgtgtaatggccaaaggtgcg 70  Q
    |||||||| |||||||||||||||||  ||||||||||| |||||    
T  26798038 aaaatctacgtccaccagcacccgcgcataatggccaaatgtgcg 26798082  T

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