View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7963_low_31 (Length: 253)
Name: NF7963_low_31
Description: NF7963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7963_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 24 - 219
Target Start/End: Original strand, 42475574 - 42475769
Alignment:
| Q |
24 |
atttattcatttatatcttattttcaaatgaggattggggaaattgatcttggttttgtcaaattgaaatagacatttgagcattgtaaaattttctctg |
123 |
Q |
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| T |
42475574 |
atttattcatttatatcttattttcaaatgaggattggggaaattgatcttggttttgtcaaattgaaatagacatttgagcattgtaaaattttctctg |
42475673 |
T |
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| Q |
124 |
ctttgtcatatatggaggaagatcattgttgaacaagatatctatgtttgaatgcagcattttgattcagcaagtggatatttcatctcacaggtt |
219 |
Q |
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| T |
42475674 |
ctttgtcgtatatggaggaagatcattgttgaacaagatatctatgtttgaatgcagcattttgattcagcaagtggatatttcatctcacaggtt |
42475769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 132 - 219
Target Start/End: Original strand, 42468267 - 42468353
Alignment:
| Q |
132 |
tatatggaggaagatcattgttgaacaagatatctatgtttgaatgcagcattttgattcagcaagtggatatttcatctcacaggtt |
219 |
Q |
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| T |
42468267 |
tatatggagaaagatcattgtctaacaagatatctatatttgaatgcagcattttgattc-gtaagtggatatttcatctcacaggtt |
42468353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 42480969 - 42481016
Alignment:
| Q |
32 |
atttatatcttattttcaaatgaggattggggaaattgatcttggttt |
79 |
Q |
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| T |
42480969 |
atttatatcttattttcaaatgagggcttgggaaattgatctttgttt |
42481016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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