View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7963_low_35 (Length: 240)
Name: NF7963_low_35
Description: NF7963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7963_low_35 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 325314 - 325536
Alignment:
| Q |
18 |
aacatgtttaagagagaaggtctataaatttgaaatgaggagaaatattcaagattcagttaaatacatagaaatattgattaatgagttagttaccact |
117 |
Q |
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| T |
325314 |
aacatgtttaagagagagcgtctataaatttgaaatgaggagaaatattcaagattcagttaaatacatagaaatattgattaatgagttagttaccact |
325413 |
T |
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| Q |
118 |
tccttggtatctagttacaaccctcttaacagttagttataactaccttaaaagttagttattgattattaattagttacaaccaagtatataaagaaaa |
217 |
Q |
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| T |
325414 |
tccttggtatctagttacaaccctcttaacagttagttataactaccttaaaagttagttattgattattaattagttacaaccaagtatataaagaaaa |
325513 |
T |
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| Q |
218 |
aatataaatattgatttattgat |
240 |
Q |
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|||| |||||||||||||||||| |
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| T |
325514 |
aatagaaatattgatttattgat |
325536 |
T |
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