View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7963_low_36 (Length: 238)
Name: NF7963_low_36
Description: NF7963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7963_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 16192588 - 16192360
Alignment:
| Q |
1 |
cacaaaatatataagaaactcactatatatgtagggaaggaaagaatgaagaatataaggtgatgagtaaagtggtgactggggaatgagtggacaatgc |
100 |
Q |
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| T |
16192588 |
cacaaaatatataagaaactcactatatatgtagggaaggaaagaatgaagaatataagttgatgagtaaagtggtgactggggaatgagtggacagtgc |
16192489 |
T |
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| Q |
101 |
attgtcccaatacgcgtttggttcaatcaacaactgg-nnnnnnnctaaatcttttaaatattttagtaggagattcatctcatggttatgagtattgaa |
199 |
Q |
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| T |
16192488 |
attgtcccaatacgcgtttggttcattcaacaactggaaaaaaaactaaatcttttaaatattttagtaggagattcatctcatggttatgagtattgaa |
16192389 |
T |
|
| Q |
200 |
gaacacacaatattccgtacatttgtcat |
228 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
16192388 |
gaacacacaatattccgtacatttgtcat |
16192360 |
T |
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