View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7963_low_37 (Length: 237)
Name: NF7963_low_37
Description: NF7963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7963_low_37 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 8e-85; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 12635760 - 12635586
Alignment:
| Q |
1 |
caaaatcccattttctgcatgattttccaccaaatcatttccacctatagatgaatttaaaagtacgtttttgcaactcctcatgaatctgaatacataa |
100 |
Q |
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| T |
12635760 |
caaaatcccattttcagcatgattttccaccaaattatttccacatatagatgaatttaaaagtacgtttttgcaactcctcatgaatctgaacacataa |
12635661 |
T |
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| Q |
101 |
cttacgagaaattctagtaagtcctgtatgctatgcactcgtatataaacttcgtccacttttaataattttaaa |
175 |
Q |
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| T |
12635660 |
cttacgagaaattctagtaagtcctgtatgctatgcactcgtatataaacttcgtccacttttaataattttaaa |
12635586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 12635267 - 12635230
Alignment:
| Q |
186 |
atcattgattgaatttgtgatttactaaagttgatctt |
223 |
Q |
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| T |
12635267 |
atcattgattgaatttgtgatttactaaagttgatctt |
12635230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 6217822 - 6217859
Alignment:
| Q |
186 |
atcattgattgaatttgtgatttactaaagttgatctt |
223 |
Q |
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| T |
6217822 |
atcattgattgaatttgtgattgactgaagttgatctt |
6217859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 92491 - 92528
Alignment:
| Q |
186 |
atcattgattgaatttgtgatttactaaagttgatctt |
223 |
Q |
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| T |
92491 |
atcattgattgaatctgtgatttactaaaattgatctt |
92528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 19339269 - 19339232
Alignment:
| Q |
186 |
atcattgattgaatttgtgatttactaaagttgatctt |
223 |
Q |
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| T |
19339269 |
atcattgattgaatttgtaattgactaaagttgatctt |
19339232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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