View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7963_low_38 (Length: 237)
Name: NF7963_low_38
Description: NF7963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7963_low_38 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 16192817 - 16193039
Alignment:
| Q |
1 |
atgttctttattctagtaattagtccnnnnnnnnncttcctctaaattttgttgttcttttcttgattatggaacgaagggttcttgatggtatcattaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16192817 |
atgttctttattctagtaattagtcctttttttttcttcctctaaattttgttgttcatttcttgattatggaacgaagggttcttgatggtatcattaa |
16192916 |
T |
|
| Q |
101 |
taggttgcttgatgttagaggaagacctgggaaacaagttcagctttcagagggagaaatcaagcagctttgtgtggtctctagagatatctttttgaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16192917 |
taggttgcttgatgttagaggaagacctgggaaacaggttcagctttcagagggagaaatcaagcagctttgtgtggtctctagagatatctttttgaag |
16193016 |
T |
|
| Q |
201 |
cagcctaatttgttggaacttga |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
16193017 |
cagcctaatttgttggaacttga |
16193039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 68 - 209
Target Start/End: Original strand, 33089633 - 33089774
Alignment:
| Q |
68 |
tatggaacgaagggttcttgatggtatcattaataggttgcttgatgttagaggaagacctgggaaacaagttcagctttcagagggagaaatcaagcag |
167 |
Q |
| |
|
||||||||| | ||| |||||||||| || |||||||| ||||| || ||||||||||| ||||| || ||||||||||| |||| ||||||||| ||| |
|
|
| T |
33089633 |
tatggaacgtggagttgttgatggtattatcaataggttacttgaagtaagaggaagaccagggaagcaggttcagctttctgaggcagaaatcaaacag |
33089732 |
T |
|
| Q |
168 |
ctttgtgtggtctctagagatatctttttgaagcagcctaat |
209 |
Q |
| |
|
|||||| | ||||||| ||||||||| |||| ||||||||| |
|
|
| T |
33089733 |
ctttgtcttgtctctaaagatatcttcatgaaccagcctaat |
33089774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University