View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7963_low_39 (Length: 230)
Name: NF7963_low_39
Description: NF7963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7963_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 1625080 - 1624878
Alignment:
| Q |
1 |
caaaaattgttcaccgaatgatgtacaaacatggctcacaacttctctcacaaatattgaaacatgtaaaagtggagctttagaactcaatgctcaagat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1625080 |
caaaaattgttcaccgaatgatgtacaaacatggctcacaacttctctcacaaatattgaaacatgtaaaagtggagctttagaactcaatgctcaagat |
1624981 |
T |
|
| Q |
101 |
ttcattttcattatgcaaaccaatgtcattgagatgataaggaacatcttagccatcaatatgcattttctgaaacataacaaaggtattaaaaatgatt |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1624980 |
ttcaatttcattatgcaaaccaatgtcattgagatgataaggaacatcttagccatcaatatgcattttctgaaacataacaaaggtattaacaatgatt |
1624881 |
T |
|
| Q |
201 |
tta |
203 |
Q |
| |
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||| |
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|
| T |
1624880 |
tta |
1624878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 1608073 - 1607871
Alignment:
| Q |
1 |
caaaaattgttcaccgaatgatgtacaaacatggctcacaacttctctcacaaatattgaaacatgtaaaagtggagctttagaactcaatgctcaagat |
100 |
Q |
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|
||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1608073 |
caaaaattgttcaccaaatgatgcacaaacatggctaacaacttctctcacaaatattgaaacatgtaaaagtggagctttagaactcaatgctcaagat |
1607974 |
T |
|
| Q |
101 |
ttcattttcattatgcaaaccaatgtcattgagatgataaggaacatcttagccatcaatatgcattttctgaaacataacaaaggtattaaaaatgatt |
200 |
Q |
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||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||| ||||||| |
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| T |
1607973 |
ttcgatttcattatgcaaaccaatgtcactgaaatgataaggaacatcttagccatcaatatgcatttcctgaaacatagcaaaggtactaacaatgatt |
1607874 |
T |
|
| Q |
201 |
tta |
203 |
Q |
| |
|
||| |
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|
| T |
1607873 |
tta |
1607871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 1631563 - 1631361
Alignment:
| Q |
1 |
caaaaattgttcaccgaatgatgtacaaacatggctcacaacttctctcacaaatattgaaacatgtaaaagtggagctttagaactcaatgctcaagat |
100 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1631563 |
caaaaattgttcaccaaatgatgcacaaacatggctaacaacttctctcacaaatattgaaacatgtaaaagtggagctttagaactcaatgctcaagat |
1631464 |
T |
|
| Q |
101 |
ttcattttcattatgcaaaccaatgtcattgagatgataaggaacatcttagccatcaatatgcattttctgaaacataacaaaggtattaaaaatgatt |
200 |
Q |
| |
|
||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||| ||||||| |
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| T |
1631463 |
ttcgatttcattatgcaaaccaatgtcactgaaatgataaggaacatcttagccatcaatatgcatttcctgaaacatagcaaaggtactaacaatgatt |
1631364 |
T |
|
| Q |
201 |
tta |
203 |
Q |
| |
|
||| |
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|
| T |
1631363 |
tta |
1631361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 2 - 203
Target Start/End: Original strand, 10818980 - 10819181
Alignment:
| Q |
2 |
aaaaattgttcaccgaatgatgtacaaacatggctcacaacttctctcacaaatattgaaacatgtaaaagtggagctttagaactcaatgctcaagatt |
101 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10818980 |
aaaaattgttcaccaaatgatgcacaaacatggctcacaacttctctcacaaatattgaaacatgtaaaagtggagctttagaactcaatgctcaagatt |
10819079 |
T |
|
| Q |
102 |
tcattttcattatgcaaaccaatgtcattgagatgataaggaacatcttagccatcaatatgcattttctgaaacataacaaaggtattaaaaatgattt |
201 |
Q |
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||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||| | ||||| ||| |||||||| |
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| T |
10819080 |
tcaatttcattatgcaagccaatgtcactgagatgataaggaacatcttagccatcaatatgcatttcctgaatcataaaacaggtactaacaatgattt |
10819179 |
T |
|
| Q |
202 |
ta |
203 |
Q |
| |
|
|| |
|
|
| T |
10819180 |
ta |
10819181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 18786021 - 18785834
Alignment:
| Q |
1 |
caaaaattgttcaccgaatgatgtacaaacatggctcacaacttctctcacaaatattgaaacatgtaaaagtggagctttagaactcaatgctcaagat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18786021 |
caaaaattgttcaccgaatgatgtacaaacatggctcacaacttctctcacaaatattgaaacatgtaaaagtggagctttagaactcaatgctcaagat |
18785922 |
T |
|
| Q |
101 |
ttcattttcattatgcaaaccaatgtcattgagatgataaggaacatcttagccatcaatatgcattttctgaaacataacaaaggta |
188 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
18785921 |
ttcaatttcattatgcaaaccaatgtcattgagatgataaggaacatcttagccatcaatatgcatttcctaaaacataacaaaggta |
18785834 |
T |
|
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