View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7963_low_4 (Length: 509)

Name: NF7963_low_4
Description: NF7963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7963_low_4
NF7963_low_4
[»] scaffold0713 (1 HSPs)
scaffold0713 (402-499)||(3511-3608)
[»] chr1 (3 HSPs)
chr1 (402-499)||(14648681-14648778)
chr1 (402-499)||(14658471-14658568)
chr1 (418-489)||(17654886-17654956)
[»] chr6 (16 HSPs)
chr6 (60-192)||(31290833-31290965)
chr6 (402-499)||(27525642-27525739)
chr6 (117-261)||(26629201-26629346)
chr6 (117-261)||(26735177-26735322)
chr6 (82-188)||(26963980-26964086)
chr6 (82-188)||(26650739-26650845)
chr6 (82-188)||(26756707-26756813)
chr6 (59-128)||(27652757-27652826)
chr6 (25-81)||(27422832-27422888)
chr6 (59-118)||(26640274-26640331)
chr6 (59-118)||(26746240-26746297)
chr6 (59-101)||(27506761-27506803)
chr6 (136-180)||(26964723-26964767)
chr6 (15-47)||(26629362-26629394)
chr6 (15-47)||(26735338-26735370)
chr6 (201-261)||(27422971-27423031)
[»] chr5 (1 HSPs)
chr5 (402-499)||(27199781-27199878)
[»] scaffold0003 (2 HSPs)
scaffold0003 (25-81)||(64475-64531)
scaffold0003 (201-261)||(64332-64392)
[»] chr4 (3 HSPs)
chr4 (58-109)||(18719305-18719354)
chr4 (59-109)||(18674703-18674751)
chr4 (62-109)||(18692787-18692832)


Alignment Details
Target: scaffold0713 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 402 - 499
Target Start/End: Original strand, 3511 - 3608
Alignment:
Q  402 gatgtagacaaaacatggaagctactagatttttcccacacaccctttgctcattctctttcccgtattcctctttcgtctttgttctttcatctcac 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  3511 gatgtagacaaaacatggaagctactagatttttcccacacacccttttctcattctctttcccgtattcctctttcctctttgttctttcatgtcac 3608  T

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Target: chr1 (Bit Score: 86; Significance: 7e-41; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 402 - 499
Target Start/End: Original strand, 14648681 - 14648778
Alignment:
Q  402 gatgtagacaaaacatggaagctactagatttttcccacacaccctttgctcattctctttcccgtattcctctttcgtctttgttctttcatctcac 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  14648681 gatgtagacaaaacatggaagctactagatttttcccacacacccttttctcattctctttcccgtattcctctttcctctttgttctttcatgtcac 14648778  T

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Target: chr1; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 402 - 499
Target Start/End: Original strand, 14658471 - 14658568
Alignment:
Q  402 gatgtagacaaaacatggaagctactagatttttcccacacaccctttgctcattctctttcccgtattcctctttcgtctttgttctttcatctcac 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  14658471 gatgtagacaaaacatggaagctactagatttttcccacacacccttttctcattctctttcccgtattcctctttcctctttgttctttcatgtcac 14658568  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 418 - 489
Target Start/End: Complemental strand, 17654956 - 17654886
Alignment:
Q  418 ggaagctactagatttttcccacacaccctttgctcattctctttcccgtattcctctttcgtctttgttct 489  Q
    ||||||||||||||||||||| |||||||||| ||| |||||||||||||||  ||||||| ||| ||||||    
T  17654956 ggaagctactagatttttccctcacacccttt-ctctttctctttcccgtatcactctttcctctctgttct 17654886  T

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Target: chr6 (Bit Score: 85; Significance: 3e-40; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 60 - 192
Target Start/End: Complemental strand, 31290965 - 31290833
Alignment:
Q  60 tggaagtacaaaaccaaaactttgagttatgaaacgaaattctccacttcgttttgccaaatcgaaacataatttaataggagaaaggtttctttatacc 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||| ||||| |||||| ||| | |||||||||||    
T  31290965 tggaagtacaaaaccaaaactttgagttatgaaacgaaattctccacttccatttgccaaatcaaaacaaaatttgataggaaaaaagcttctttatacc 31290866  T
Q  160 ataaagttcatacatataaatttttccacaaca 192  Q
    ||  ||||||||||||||||| || ||||||||    
T  31290865 atctagttcatacatataaatgttcccacaaca 31290833  T

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Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 402 - 499
Target Start/End: Original strand, 27525642 - 27525739
Alignment:
Q  402 gatgtagacaaaacatggaagctactagatttttcccacacaccctttgctcattctctttcccgtattcctctttcgtctttgttctttcatctcac 499  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  27525642 gatgtacacaaaacatggaagctactagatttttcccacacacccttttctcattctctttcccgtattcctctttcctctttgttctttcatgtcac 27525739  T

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Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 117 - 261
Target Start/End: Complemental strand, 26629346 - 26629201
Alignment:
Q  117 caaatcgaaacataatttaataggagaaaggt-ttctttataccataaagttcatacatataaatttttccacaacaaatacttcttttgcaatttgtaa 215  Q
    |||||| ||| | ||||| |||||| |||||  ||||||||||||| |||||||||||||||||| |||||| |||| ||| || ||||||||||| |||    
T  26629346 caaatcaaaagaaaatttgataggaaaaaggccttctttataccatcaagttcatacatataaatgtttccaaaacatatattttttttgcaatttttaa 26629247  T
Q  216 ttctctgaagtatctatttgactgtgatagaagatgaagtttgtat 261  Q
    |||| |||| ||||||||| | ||||||| |||||||| |||||||    
T  26629246 ttctttgaattatctatttcagtgtgatataagatgaaatttgtat 26629201  T

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Target: chr6; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 117 - 261
Target Start/End: Complemental strand, 26735322 - 26735177
Alignment:
Q  117 caaatcgaaacataatttaataggagaaaggt-ttctttataccataaagttcatacatataaatttttccacaacaaatacttcttttgcaatttgtaa 215  Q
    |||||| ||| | ||||| |||||| |||||  ||||||||||||| |||||||||||||||||| |||||| |||| ||| || ||||||||||| |||    
T  26735322 caaatcaaaagaaaatttgataggaaaaaggccttctttataccatcaagttcatacatataaatgtttccaaaacatatattttttttgcaatttttaa 26735223  T
Q  216 ttctctgaagtatctatttgactgtgatagaagatgaagtttgtat 261  Q
    |||| |||| ||||||||| | ||||||| |||||||| |||||||    
T  26735222 ttctttgaattatctatttcagtgtgatataagatgaaatttgtat 26735177  T

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Target: chr6; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 82 - 188
Target Start/End: Complemental strand, 26964086 - 26963980
Alignment:
Q  82 tgagttatgaaacgaaattctccacttcgttttgccaaatcgaaacataatttaataggagaaaggtttctttataccataaagttcatacatataaatt 181  Q
    |||||||||||| |||||||||||||||  ||||| || |||||||| ||||| |||||| ||||| || | |||||||| |||||||||||||||||      
T  26964086 tgagttatgaaaggaaattctccacttccatttgcaaattcgaaacaaaatttgataggaaaaaggcttttgtataccatcaagttcatacatataaacg 26963987  T
Q  182 tttccac 188  Q
    |||||||    
T  26963986 tttccac 26963980  T

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Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 82 - 188
Target Start/End: Complemental strand, 26650845 - 26650739
Alignment:
Q  82 tgagttatgaaacgaaattctccacttcgttttgccaaatcgaaacataatttaataggagaaaggtttctttataccataaagttcatacatataaatt 181  Q
    |||||||||||| |||||||||||||||  ||||| || |||||||| ||||| || ||| ||||| |||| |||||||| || ||||||||||||||      
T  26650845 tgagttatgaaaggaaattctccacttccatttgcaaattcgaaacaaaatttgattggaaaaaggcttctgtataccatcaatttcatacatataaacg 26650746  T
Q  182 tttccac 188  Q
    |||||||    
T  26650745 tttccac 26650739  T

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Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 82 - 188
Target Start/End: Complemental strand, 26756813 - 26756707
Alignment:
Q  82 tgagttatgaaacgaaattctccacttcgttttgccaaatcgaaacataatttaataggagaaaggtttctttataccataaagttcatacatataaatt 181  Q
    |||||||||||| |||||||||||||||  ||||| || |||||||| ||||| || ||| ||||| |||| |||||||| || ||||||||||||||      
T  26756813 tgagttatgaaaggaaattctccacttccatttgcaaattcgaaacaaaatttgattggaaaaaggcttctgtataccatcaatttcatacatataaacg 26756714  T
Q  182 tttccac 188  Q
    |||||||    
T  26756713 tttccac 26756707  T

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Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 27652757 - 27652826
Alignment:
Q  59 ttggaagtacaaaaccaaaactttgagttatgaaacgaaattctccacttcgttttgccaaatcgaaaca 128  Q
    ||||||| | |||||||||| ||||||||||||||||||||||||||||||  ||||||| ||| |||||    
T  27652757 ttggaagcataaaaccaaaattttgagttatgaaacgaaattctccacttccatttgccagatcaaaaca 27652826  T

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Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 27422832 - 27422888
Alignment:
Q  25 ggagtagcagataaaagtaaattaattttttctattggaagtacaaaaccaaaactt 81  Q
    ||||||||||||  |||||||||||||||| |||||| |||||||||||||||||||    
T  27422832 ggagtagcagatcgaagtaaattaatttttcctattgtaagtacaaaaccaaaactt 27422888  T

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Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 118
Target Start/End: Complemental strand, 26640331 - 26640274
Alignment:
Q  59 ttggaagtacaaaaccaaaactttgagttatgaaacgaaattctccacttcgttttgcca 118  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||| |||  |||||||    
T  26640331 ttggaagtacaaaaccaaaact--gagttatgaaacgaaattctccatttccatttgcca 26640274  T

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Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 118
Target Start/End: Complemental strand, 26746297 - 26746240
Alignment:
Q  59 ttggaagtacaaaaccaaaactttgagttatgaaacgaaattctccacttcgttttgcca 118  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||| |||  |||||||    
T  26746297 ttggaagtacaaaaccaaaact--gagttatgaaacgaaattctccatttccatttgcca 26746240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 101
Target Start/End: Original strand, 27506761 - 27506803
Alignment:
Q  59 ttggaagtacaaaaccaaaactttgagttatgaaacgaaattc 101  Q
    ||||||||||||||||||||||||||| |||||||||| ||||    
T  27506761 ttggaagtacaaaaccaaaactttgagctatgaaacgatattc 27506803  T

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Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 26964767 - 26964723
Alignment:
Q  136 ataggagaaaggtttctttataccataaagttcatacatataaat 180  Q
    |||||| ||||| ||||||||||||| ||||||||||||||||||    
T  26964767 ataggaaaaaggcttctttataccatcaagttcatacatataaat 26964723  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 26629394 - 26629362
Alignment:
Q  15 aaaaatatatggagtagcagataaaagtaaatt 47  Q
    ||||||||||||||||||||||||||| |||||    
T  26629394 aaaaatatatggagtagcagataaaaggaaatt 26629362  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 26735370 - 26735338
Alignment:
Q  15 aaaaatatatggagtagcagataaaagtaaatt 47  Q
    ||||||||||||||||||||||||||| |||||    
T  26735370 aaaaatatatggagtagcagataaaaggaaatt 26735338  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 27422971 - 27423031
Alignment:
Q  201 ttttgcaatttgtaattctctgaagtatctatttgactgtgatagaagatgaagtttgtat 261  Q
    ||||||||||| |||| |  | || ||||||||| ||||||||| ||||||||||||||||    
T  27422971 ttttgcaatttttaatcccttaaactatctatttaactgtgatataagatgaagtttgtat 27423031  T

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Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 402 - 499
Target Start/End: Complemental strand, 27199878 - 27199781
Alignment:
Q  402 gatgtagacaaaacatggaagctactagatttttcccacacaccctttgctcattctctttcccgtattcctctttcgtctttgttctttcatctcac 499  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||| ||||    
T  27199878 gatgtagacaaaacacggaagctactagatttttcccacacacccttttctcattctctttcccgtattcctctttcctctctgttctttcatgtcac 27199781  T

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Target: scaffold0003 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 64531 - 64475
Alignment:
Q  25 ggagtagcagataaaagtaaattaattttttctattggaagtacaaaaccaaaactt 81  Q
    ||||||||||||  |||||||||||||||| |||||| |||||||||||||||||||    
T  64531 ggagtagcagatcgaagtaaattaatttttcctattgtaagtacaaaaccaaaactt 64475  T

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Target: scaffold0003; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 64392 - 64332
Alignment:
Q  201 ttttgcaatttgtaattctctgaagtatctatttgactgtgatagaagatgaagtttgtat 261  Q
    ||||||||||| |||| |  | || ||||||||| ||||||||| ||||||||||||||||    
T  64392 ttttgcaatttttaatcccttaaactatctatttaactgtgatataagatgaagtttgtat 64332  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 109
Target Start/End: Original strand, 18719305 - 18719354
Alignment:
Q  58 attggaagtacaaaaccaaaactttgagttatgaaacgaaattctccacttc 109  Q
    |||||||||||||||||||||||  || ||||||||||||||||||||||||    
T  18719305 attggaagtacaaaaccaaaact--gacttatgaaacgaaattctccacttc 18719354  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 109
Target Start/End: Original strand, 18674703 - 18674751
Alignment:
Q  59 ttggaagtacaaaaccaaaactttgagttatgaaacgaaattctccacttc 109  Q
    |||||||||||||||||||||  ||| |||||||| |||||||||||||||    
T  18674703 ttggaagtacaaaaccaaaac--tgatttatgaaatgaaattctccacttc 18674751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 18692787 - 18692832
Alignment:
Q  62 gaagtacaaaaccaaaactttgagttatgaaacgaaattctccacttc 109  Q
    |||||||||||||||||||  || |||||||| |||||||||||||||    
T  18692787 gaagtacaaaaccaaaact--gatttatgaaatgaaattctccacttc 18692832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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