View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7963_low_5 (Length: 484)
Name: NF7963_low_5
Description: NF7963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7963_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 13 - 467
Target Start/End: Original strand, 34175621 - 34176077
Alignment:
| Q |
13 |
aatatcttctgatgattttatatgactactaggaactaacagtccaataattatatgatagttgttatcnnnnnnn--ttggtctatccatgaattagtc |
110 |
Q |
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| T |
34175621 |
aatatcttctgatgattttatatgactactaggaactaacagtccaataattatatgatagttgttatcaacaaaaaattggtctattcatgaattagtc |
34175720 |
T |
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| Q |
111 |
aaagtgataagagatttgaaccccttaaacaagtggtcataggtttgttatgcgactcttgcgtatggaagaacacatcttttattgagattgatcacta |
210 |
Q |
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| T |
34175721 |
aaagtgataagagatttgaaccccttaaacaagtgatcataggtttattatgcgactcttgcgtatggaagaacacatcttttattgaaattgatcacta |
34175820 |
T |
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| Q |
211 |
ttaaacaacaatgaaaacttcatactgataacatgataaaagaaatatatcatattatagccctttgttgagagctcaaaattaattgcaagagaaaaca |
310 |
Q |
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| T |
34175821 |
ttaaacaacagtgaaaacttcatactaataacatgataaaagaaatatatcatattatagctctttcttgagagctcaaaattaattgcaagagaaaaca |
34175920 |
T |
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| Q |
311 |
aacctgaaatttagttaaattcagttggaaagtaatcaagtataaaatgtagcatggtgttaatatccaatcaaactttagagtatgaaattccttaaaa |
410 |
Q |
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| T |
34175921 |
aacctgaaatttagttaaattcagttggaaagtaatcaagtataaaatgtagcatggtgttaatatccaatcaaactttagagtatgaaattccttaaaa |
34176020 |
T |
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| Q |
411 |
ggaaaactttagagtatgaaatcattagtaaaaaagcaagtacatcacataatatat |
467 |
Q |
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| T |
34176021 |
ggaaaactttagagtatgaaatcattagtaaaaaagcaagtacatcacatactatat |
34176077 |
T |
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