View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7963_low_6 (Length: 453)
Name: NF7963_low_6
Description: NF7963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7963_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 436
Target Start/End: Original strand, 29435915 - 29436344
Alignment:
| Q |
1 |
cagaatatggaggaacataattatgatatgtttctataactgaagccagcannnnnnnnnngttaaggctgaaggcagcatannnnnnngaaggttgaag |
100 |
Q |
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| T |
29435915 |
cagaatatggaggaacataattatgatatgtttctataactgaagccagcatattttttttgttaaggctgaagccagcatatttttttgaaggttgaag |
29436014 |
T |
|
| Q |
101 |
ctaccataatatgtttctataagtcaatttgaagattgttgtatgtaacaccgacacttcattttgaaagcatttctgatgtgttacatgtgttagtata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
29436015 |
ctaccataatatgtttctataagtcaatttgaagattgttgtatgtaacaccgacactttattttgaaagcatttctgatgtgttacatgtgttag--ta |
29436112 |
T |
|
| Q |
201 |
tatgataccgccgaaacatcaatatatctagttatattcaatcacttctannnnnnnnnnnaaaattattattggtgtcgaagtagtgtctgtttcgtgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
29436113 |
tatgataccgccgaaacatcaatatatctagttatattcaatcacttctatttttattttttaaattattattggtgtctaagtagtgtctgtttcgtgt |
29436212 |
T |
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| Q |
301 |
ctcgtgtcaatgtttgtattttcttttcataatttatgttgtatttgttttcccnnnnnnnnnnnnnnnnntgaaatgttacttgttaaaatatatatat |
400 |
Q |
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| T |
29436213 |
ctcgtgtcaatgtttgtattttcttttcataatttatgttgtatttgttttcccaaaaaaatggaaaaaaatgaaatgttacttgttaaa----atatat |
29436308 |
T |
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| Q |
401 |
gaaagatttgataattaatttggatgcagggttcat |
436 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
29436309 |
gaaagatttgataattaatttggatgcagggttcat |
29436344 |
T |
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