View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7963_low_7 (Length: 448)
Name: NF7963_low_7
Description: NF7963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7963_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 6e-81; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 7 - 428
Target Start/End: Complemental strand, 11248221 - 11247788
Alignment:
| Q |
7 |
aaacagtgctctcaaaattcagaacaatgaatgtgggggagaagagcaacaaaacggttgatcaagagacttacatgaaagaaagggttctaaaggctaa |
106 |
Q |
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| T |
11248221 |
aaacagtgctctcaaaattcagaacaatgactgaaagggataagagcaagaaaatggtgaatcaagaaacatatatgaaagaaagggttctaaaggccaa |
11248122 |
T |
|
| Q |
107 |
agagaaactgaagatacaaaggcatgataacaaggagatggagatgacaatgctcatgaatcaatatctttttcaaagtgaattgatgcataataatatg |
206 |
Q |
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| T |
11248121 |
agagaaactgaagatgcaaaggcatgacaacaaagagaaagagatggcaatgctgatgtttcaatatctttatgaaggtaactttatgcagagtaatatg |
11248022 |
T |
|
| Q |
207 |
tcattggttgattcaaaacatcttcgttcgttgattgaccacaaattggaggaggttggtagaaggttggaagcagaggataataatggtcaacgt---- |
302 |
Q |
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| T |
11248021 |
tcattggttgattcaaaacatctttgttggttgattgaccagaaattgaaggaggttggtagaaggttgggagaagaggataataatggtcaacatgaaa |
11247922 |
T |
|
| Q |
303 |
--------caaataccaccactatttacattcagtagtgaagaaatggcaatgatgggtcctggccatgctgcaatgccgatgaataatggcgacaactt |
394 |
Q |
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| T |
11247921 |
ttcaattccaaatggcaccaccattgacatccaggaacgaagaaatggcaaggatgggtcatggccatgctgggatgactgtgaataatggtgaaatcat |
11247822 |
T |
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| Q |
395 |
tgaaagtcagtctttcatgggcttgatgatgaat |
428 |
Q |
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| T |
11247821 |
tgaaagtcaacttttgatgggcttgatgatgaat |
11247788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 9895166 - 9894890
Alignment:
| Q |
1 |
gagtcgaaacagtgctctcaaaa-ttcagaacaatgaatgtgggggagaagagcaacaaaacggttgatcaagagacttacatgaaagaaagggttctaa |
99 |
Q |
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| T |
9895166 |
gagtccaaacagtgctctcaaaaattcagaacaatgtctgagtgggagaagagccagaaaatgatgaaccaagagacttatatgatacaaagggttctga |
9895067 |
T |
|
| Q |
100 |
aggctaaagagaaactgaagatacaaaggcatgataacaaggagatggagatgacaatgctcatgaatcaatatctttttcaaagtgaattgatgcataa |
199 |
Q |
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|||| |||||||||||||||| |||||||||||| ||| | |||| |||||| ||||||||| ||||| ||||| | || | |||| ||||| || |
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| T |
9895066 |
aggccaaagagaaactgaagacacaaaggcatgaaaactatgagaaagagatggttatgctcatgtttcaatgtctttgtgaaggcaaattaatgcagaa |
9894967 |
T |
|
| Q |
200 |
taatatgtcattggttgattcaaaacatcttcgttcgttgattgaccacaaattggaggaggttggtagaaggttgg |
276 |
Q |
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| T |
9894966 |
taatatctccttggttgattcaaaacatctttgttggttgattgaccaaaaatggaaggacgttagtagaaggttgg |
9894890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 308 - 429
Target Start/End: Original strand, 11108657 - 11108778
Alignment:
| Q |
308 |
accaccactatttacattcagtagtgaagaaatggcaatgatgggtcctggccatgctgcaatgccgatgaataatggcgacaactttgaaagtcagtct |
407 |
Q |
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| T |
11108657 |
accaccaccatttacatccagtaatgaagaaatggcaatgatgggtcctggccatgctggaatacctatgaataatgacgacgacattgaaattcaatct |
11108756 |
T |
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| Q |
408 |
ttcatgggcttgatgatgaata |
429 |
Q |
| |
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| T |
11108757 |
ttcatgggcttgatgatgaata |
11108778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 138 - 248
Target Start/End: Original strand, 11108551 - 11108661
Alignment:
| Q |
138 |
aaggagatggagatgacaatgctcatgaatcaatatctttttcaaagtgaattgatgcataataatatgtcattggttgattcaaaacatcttcgttcgt |
237 |
Q |
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||||||| |||||||||||||||||||||||||| ||||||| |||| |||| ||||| ||||||||||||||||||||||||||||||||| || || |
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| T |
11108551 |
aaggagaaggagatgacaatgctcatgaatcaatgtctttttgaaagcaaatttatgcagaataatatgtcattggttgattcaaaacatcttttttggt |
11108650 |
T |
|
| Q |
238 |
tgattgaccac |
248 |
Q |
| |
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||| ||||||| |
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| T |
11108651 |
tgactgaccac |
11108661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 299
Target Start/End: Original strand, 13308588 - 13308651
Alignment:
| Q |
236 |
gttgattgaccacaaattggaggaggttggtagaaggttggaagcagaggataataatggtcaa |
299 |
Q |
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| T |
13308588 |
gttgattgaccaaaatttgaaggacattggaagaaggttggaagcagtggacaataatggtcaa |
13308651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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