View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7964_high_1 (Length: 239)
Name: NF7964_high_1
Description: NF7964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7964_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 14)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 10604065 - 10603839
Alignment:
| Q |
1 |
agcttatgcattcaccaatagttccaggaatctccccacacaaatgattctgagagacatctaaccaatcaatattttttagcatacccatttcttttgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10604065 |
agcttatgcattcaccaatagttccaggaatctccccacacaaatgattttcagagacatctaaccaatcaatattttttagcatacccacttcttttgg |
10603966 |
T |
|
| Q |
101 |
taagctaccactcaatttgtttcgtgacaagtcaagtaaatttgtcaaagaggaaatactaaaaatctctaaaggtatggaccctctaaggttgttttgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
10603965 |
taagctaccactcaatttgtttcgtgacaagtcaagtaaatttgtcaaagaggaaatactaaaaatatctaaaggtatggaccctctaaggttgttttgt |
10603866 |
T |
|
| Q |
201 |
gaaaagtctaggtattgtaacttttga |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
10603865 |
gaaaagtctaggtattgtaacttttga |
10603839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 10 - 172
Target Start/End: Complemental strand, 10601159 - 10600997
Alignment:
| Q |
10 |
attcaccaatagttccaggaatctccccacacaaatgattctgagagacatctaaccaatcaatattttttagcatacccatttcttttggtaagctacc |
109 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
10601159 |
attcaccaatggttccagtaatctccccacacaaatgattctcagagacatctagccaatcaatattttttagcatacccacttcttttgttaagctacc |
10601060 |
T |
|
| Q |
110 |
actcaatttgtttcgtgacaagtcaagtaaatttgtcaaagaggaaatactaaaaatctctaa |
172 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
10601059 |
tctcaatatgtttcgtgacaagtcaagtacatttgtcaaagaggaaatactaaaaatctctaa |
10600997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 10580312 - 10580095
Alignment:
| Q |
7 |
tgcattcaccaatagttccaggaatctccccacacaaatgattctgagagacatctaaccaatcaatattttttagcatacccatttcttttggtaagct |
106 |
Q |
| |
|
||||||||||||| |||||| |||| |||||| | ||| |||||| ||||||||||| || |||||| ||||||||||||||| |||||| ||||| || |
|
|
| T |
10580312 |
tgcattcaccaatggttccaagaatgtccccaaataaacgattctcagagacatctaccccctcaatactttttagcatacccacttctttaggtaatct |
10580213 |
T |
|
| Q |
107 |
accactcaatttgtttcgtgacaagtcaagtaaatttgtcaaagaggaaatactaaaaatctctaaaggtatggaccctctaaggttgttttgtgaaaag |
206 |
Q |
| |
|
| || |||| |||||||||| ||||||||| |||| ||||| |||||||||||| ||||||||| ||||||| |||||||||| |||||||||||| |
|
|
| T |
10580212 |
atcattcaacatgtttcgtgaaaagtcaagt---tttgacaaaggggaaatactaaagatctctaaacgtatggatcctctaaggtcattttgtgaaaag |
10580116 |
T |
|
| Q |
207 |
tctaggtattgtaacttttga |
227 |
Q |
| |
|
| |||||||| |||||||||| |
|
|
| T |
10580115 |
tttaggtattctaacttttga |
10580095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 10747917 - 10748137
Alignment:
| Q |
7 |
tgcattcaccaatagttccaggaatctccccacacaaatgattctgagagacatctaaccaatcaatattttttagcatacccatttcttttggtaagct |
106 |
Q |
| |
|
|||| |||||||| ||| |||||| || ||| | | |||||||| ||||||||||| |||||||||||||||||| | ||||| |||| |||||||||| |
|
|
| T |
10747917 |
tgcaatcaccaattgttgtaggaatatcaccagatagatgattctcagagacatctagccaatcaatattttttagtaaacccacttctcttggtaagct |
10748016 |
T |
|
| Q |
107 |
accactcaatttgtttcgtgacaagtcaagtaaatttgtcaaagaggaaatactaaaaatctctaaaggtatggaccctctaaggttgttttgtgaaaag |
206 |
Q |
| |
|
||||||||| ||| |||| |||| | ||| |||| ||||| ||||| |||||||||| ||||||||| || ||||| || || || |||| |
|
|
| T |
10748017 |
accactcaaaaagttatgtgataagttcaataagtttgataaagaaaaaatatgaaaaatctctgaaggtatggttccactaagcttattatgagaaaga |
10748116 |
T |
|
| Q |
207 |
tctaggtattgtaacttttga |
227 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
10748117 |
tctaggtattgtaacttttga |
10748137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 45 - 227
Target Start/End: Complemental strand, 10610979 - 10610797
Alignment:
| Q |
45 |
tgattctgagagacatctaaccaatcaatattttttagcatacccatttcttttggtaagctaccactcaatttgtttcgtgacaagtcaagtaaatttg |
144 |
Q |
| |
|
||||||| ||| ||||||| | || |||||||||||||||||||| |||| ||||||||||||||||||| ||| | ||||||| | |||||||| |
|
|
| T |
10610979 |
tgattctcagatacatctagcatattaatattttttagcatacccacttctcttggtaagctaccactcaaagagttatgcgacaagttcaataaatttg |
10610880 |
T |
|
| Q |
145 |
tcaaagaggaaatactaaaaatctctaaaggtatggaccctctaaggttgttttgtgaaaagtctaggtattgtaacttttga |
227 |
Q |
| |
|
||| | ||| | |||||||||||||||||||||| || ||||| || || || |||| ||||||||||||||||||||| |
|
|
| T |
10610879 |
ataaataaaaaagattaaaaatctctaaaggtatggatccactaagtttattatgagaaagatctaggtattgtaacttttga |
10610797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 76 - 225
Target Start/End: Complemental strand, 7192243 - 7192094
Alignment:
| Q |
76 |
tttttagcatacccatttcttttggtaagctaccactcaatttgtttcgtgacaagtcaagtaaatttgtcaaagaggaaatactaaaaatctctaaagg |
175 |
Q |
| |
|
||||||||||||||| |||| |||||| ||||||||||||| ||||| |||||||| ||||| |||| || || |||| ||| |||| ||||| || |
|
|
| T |
7192243 |
tttttagcatacccacttctcttggtaggctaccactcaatgagtttcttgacaagttcagtaagtttgataacgaagaaagactgaaaacttctaaggg |
7192144 |
T |
|
| Q |
176 |
tatggaccctctaaggttgttttgtgaaaagtctaggtattgtaactttt |
225 |
Q |
| |
|
||||| |||||||| |||||||||| || ||| |||||||||||||||| |
|
|
| T |
7192143 |
tatggttcctctaagattgttttgtgcaaggtccaggtattgtaactttt |
7192094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 10600227 - 10600175
Alignment:
| Q |
175 |
gtatggaccctctaaggttgttttgtgaaaagtctaggtattgtaacttttga |
227 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10600227 |
gtatggaccctcttaggttgttttgtgaaaagtctaggtattgtaacttttga |
10600175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 181
Target Start/End: Original strand, 10741601 - 10741775
Alignment:
| Q |
7 |
tgcattcaccaatagttccaggaatctccccacacaaatgattctgagagacatctaaccaatcaatattttttagcatacccatttcttttggtaagct |
106 |
Q |
| |
|
||||||||||||| |||| |||||| || ||| | | | |||||| ||| | ||||| | ||||||||||||| |||||||| |||| |||||| ||| |
|
|
| T |
10741601 |
tgcattcaccaattgttctaggaatatcaccagatagacgattctcagatagatctagcatgtcaatattttttaacatacccacttctcttggtatgct |
10741700 |
T |
|
| Q |
107 |
accactcaatttgtttcgtgacaagtcaagtaaatttgtcaaagaggaaatactaaaaatctctaaaggtatgga |
181 |
Q |
| |
|
||||||||| |||| |||||||||| | ||| |||| ||||| |||| |||||||| ||||| ||||||||| |
|
|
| T |
10741701 |
accactcaaagtgttatgtgacaagtccaataagtttgataaagaagaaagactaaaaacctctagaggtatgga |
10741775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 226
Target Start/End: Original strand, 10653099 - 10653320
Alignment:
| Q |
5 |
tatgcattcaccaatagttccaggaatctccccacacaaatgattctgagagacatctaaccaatcaatattttttagcatacccatttcttttggtaag |
104 |
Q |
| |
|
||||||||||||||| |||| ||||||||| || | | || ||| | |||| ||||||| || |||||| |||||||||||| |||| | |||||| |
|
|
| T |
10653099 |
tatgcattcaccaatggttctaggaatctcacctgatagataattatcggagatatctaactcattgatatttcttagcatacccacttctctcggtaag |
10653198 |
T |
|
| Q |
105 |
ctaccactcaatttgtttcgtgacaagtcaagtaaatttgtcaaagaggaaatactaaaaatctctaaaggtatggaccctctaaggttgttttgtgaaa |
204 |
Q |
| |
|
|||||||||||| |||| |||||| | |||| ||||| | ||||||| ||| |||| ||||| ||||||| |||| || |||||||||||| |
|
|
| T |
10653199 |
ctaccactcaatgtgttatttgacaaattcagtatgtttgttagggaggaaagacttaaaacctctatgggtatggttcctcggagaatgttttgtgaaa |
10653298 |
T |
|
| Q |
205 |
agtctaggtattgtaacttttg |
226 |
Q |
| |
|
|||||||||||||| |||||| |
|
|
| T |
10653299 |
ggtctaggtattgtagcttttg |
10653320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 85 - 226
Target Start/End: Original strand, 10661065 - 10661206
Alignment:
| Q |
85 |
tacccatttcttttggtaagctaccactcaatttgtttcgtgacaagtcaagtaaatttgtcaaagaggaaatactaaaaatctctaaaggtatggaccc |
184 |
Q |
| |
|
|||||| |||| |||||| ||||||||||||| |||| |||||||| ||||| ||||| |||||||||| |||||| | || | ||||||| || |
|
|
| T |
10661065 |
tacccacttctattggtaggctaccactcaatgagttttttgacaagttcagtaagtttgttaaagaggaaagactaaagacctttttgggtatggttcc |
10661164 |
T |
|
| Q |
185 |
tctaaggttgttttgtgaaaagtctaggtattgtaacttttg |
226 |
Q |
| |
|
|||||| |||||||||||| ||||||| |||||| |||||| |
|
|
| T |
10661165 |
tctaagaatgttttgtgaaaggtctagggattgtagcttttg |
10661206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 42 - 181
Target Start/End: Complemental strand, 10564299 - 10564160
Alignment:
| Q |
42 |
aaatgattctgagagacatctaaccaatcaatattttttagcatacccatttcttttggtaagctaccactcaatttgtttcgtgacaagtcaagtaaat |
141 |
Q |
| |
|
|||||||||| |||||||||||| |||| |||||||| | ||||| |||| ||||||||||||||||||| ||| ||||||||| | ||| | |
|
|
| T |
10564299 |
aaatgattcttagagacatctaatatttcaagattttttaagacacccagttctcttggtaagctaccactcaaagagttatgtgacaagttcaataagt |
10564200 |
T |
|
| Q |
142 |
ttgtcaaagaggaaatactaaaaatctctaaaggtatgga |
181 |
Q |
| |
|
|||| ||||| |||| |||||||| ||||| ||||||||| |
|
|
| T |
10564199 |
ttgttaaagaagaaagactaaaaacctctagaggtatgga |
10564160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 226
Target Start/End: Original strand, 9837226 - 9837449
Alignment:
| Q |
3 |
cttatgcattcaccaatagttccaggaatctccccacacaaatgattctgagagacatctaaccaatcaatattttttagcatacccatttcttttggta |
102 |
Q |
| |
|
||||||||||||||||| ||| ||||| || || ||| |||||| | ||||||||||| | || |||||||||||||| ||||| ||| | |||| |
|
|
| T |
9837226 |
cttatgcattcaccaattgttattggaatgtcacccgacagatgattttcagagacatctagcttatgaatattttttagcaaacccacttcatcaggta |
9837325 |
T |
|
| Q |
103 |
agctaccactcaatttgtttcgtgacaagtcaagtaaatttgtcaaagaggaaatactaaaaatctctaaaggtatggaccctctaaggttgttttgtga |
202 |
Q |
| |
|
| |||||||||||| ||| |||| ||||| | | |||| || || ||||||||||||| ||||| ||||||| ||| |||||||||||| || |
|
|
| T |
9837326 |
aactaccactcaatgaattttgtgataagtccaatcccgttgttaaggaaaaaatactaaaaatttctaagggtatggctccttgaaggttgttttgcga |
9837425 |
T |
|
| Q |
203 |
aaagtctaggtattgtaacttttg |
226 |
Q |
| |
|
|| || ||| ||||||||| |||| |
|
|
| T |
9837426 |
aaggtttagatattgtaacatttg |
9837449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 10764097 - 10764142
Alignment:
| Q |
69 |
tcaatattttttagcatacccatttcttttggtaagctaccactca |
114 |
Q |
| |
|
||||||||||||| |||||||| |||| |||||||||||||||||| |
|
|
| T |
10764097 |
tcaatattttttaacatacccacttctcttggtaagctaccactca |
10764142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 10717864 - 10717908
Alignment:
| Q |
71 |
aatattttttagcatacccatttcttttggtaagctaccactcaa |
115 |
Q |
| |
|
||||||||||| ||||| || |||| ||||||||||||||||||| |
|
|
| T |
10717864 |
aatattttttaacatactcacttctcttggtaagctaccactcaa |
10717908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 12947914 - 12947843
Alignment:
| Q |
44 |
atgattctgagagacatctaaccaatcaatattttttagcatacccatttcttttggtaagctaccactcaa |
115 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||| |||||||| |||| ||||||||||||||||||| |
|
|
| T |
12947914 |
atgattctcagagacatctaatgcttcaatattttttaacatacccacttctcttggtaagctaccactcaa |
12947843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 12931549 - 12931481
Alignment:
| Q |
44 |
atgattctgagagacatctaaccaatcaatattttttagcatacccatttcttttggtaagctaccact |
112 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||| |||||||| |||| |||||||||||||||| |
|
|
| T |
12931549 |
atgattctcagagacatctaatgcttcaatattttttaacatacccacttctcttggtaagctaccact |
12931481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 12957348 - 12957277
Alignment:
| Q |
44 |
atgattctgagagacatctaaccaatcaatattttttagcatacccatttcttttggtaagctaccactcaa |
115 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||| |||||||| |||| |||||||| |||| ||||| |
|
|
| T |
12957348 |
atgattctcagagacatctaaatcttcaatattttttaacatacccacttctgttggtaaggtaccgctcaa |
12957277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 115
Target Start/End: Original strand, 17924342 - 17924413
Alignment:
| Q |
44 |
atgattctgagagacatctaaccaatcaatattttttagcatacccatttcttttggtaagctaccactcaa |
115 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||| ||||| || |||| |||||||| |||||||||| |
|
|
| T |
17924342 |
atgattctcagagacatctaattcttcaatattttttaacatactcacttctcttggtaaggtaccactcaa |
17924413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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