View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7964_low_1 (Length: 298)

Name: NF7964_low_1
Description: NF7964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7964_low_1
NF7964_low_1
[»] chr7 (1 HSPs)
chr7 (1-298)||(38931698-38931995)


Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 38931995 - 38931698
Alignment:
Q  1 ctagctgggaatccagtaaaacagagtggtagaaagcgtggtgataaagaagaagaaactaacaacatgttcagtggttttgattcacgtttcttgggac 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38931995 ctagctgggaatccagtaaaacagagtggaagaaagcgtggtgataaagaagaagaaactaacaacatgttcagtggttttgattcacgtttcttgggac 38931896  T
Q  101 aagttttgaaagtgaaagaaagtataattagaaagcttcaatctccagatgaagaacatagaaagcaccaaattatacatgttaaaggaggtcttagtat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  38931895 aagttttgaaagtgaaagaaagtataattagaaagcttcaatctcaagatgaacaacatagaaagcaccaaattatacatgttaaaggaggtcttagtat 38931796  T
Q  201 tataaggccacctttggaattggaaccagaaataagatcagaagagtcaaaaacacatagtgagcatggagaaaagagagtagaggaagaagaagaag 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38931795 tataaggccacctttggaattggaaccagaaataagatcagaagaggcaaaaacacatagagagcatggagaaaagagagtagaggaagaagaagaag 38931698  T

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