View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7964_low_3 (Length: 664)
Name: NF7964_low_3
Description: NF7964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7964_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 620; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 9 - 644
Target Start/End: Original strand, 55177833 - 55178468
Alignment:
| Q |
9 |
gaagaaaataataacgaatgtgtacatgtcacatgacaatcaaaaatttcaaacataaaatgatattaattatcaattctagttaatagtatcaaagtta |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55177833 |
gaagaaaataataacgaatgtgtacatgtcacatcacaatcaaaaatttcaaacataaaatgatattaattatcaattctagttaatagtatcaaagtta |
55177932 |
T |
|
| Q |
109 |
tgattacatgtggctcaaacccttcagaaagaagaatgttggaagacttgacgtctctatgtataataggcttggaggtttggttgtgcttgtgcaggta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55177933 |
tgattacatgtggctcaaacccttcagaaagaagaatgttggaagacttgacgtctctatgtataataggcttggaggtttggttgtgcttgtgcaggta |
55178032 |
T |
|
| Q |
209 |
attcagtgcttcaccaatcccaacagctaccttaaatctgttttcccatgtcaacatagattcatccttgttcttacctatatccattatttccaatttc |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55178033 |
attcagtgcttcaccaatcccaacagctaccttaaatctgtcttcccatgtcaacatagattcatccttgttcttacctatatccattatttccaatttc |
55178132 |
T |
|
| Q |
309 |
atcagtaaataatatatcatatccactttctagtgtatatatactaattctatttttaattaattacattcaattttgtaacttccatttttatcagaaa |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55178133 |
atcagtaaataatatatcatatccactttctagtgtatatatactaattctatttttaattaattacattcaattttgtaacttccatttttatcagaaa |
55178232 |
T |
|
| Q |
409 |
agcatttagtgtgtacaggctagtagttacaatgataagtgaaaagagaagaaatattagtaggactaaccgcgtagattttggtctaaggttccttggg |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55178233 |
agcatttagtgtgtacaggctagtagttacaatgataagtgaaaagagaagaaatattagtaggactaaccgcgtagattttggtctaaggttccttggg |
55178332 |
T |
|
| Q |
509 |
ggaaataatcataaacagatatcgaagtctcatctctaatacaaatccctagcagaggagcgatgcgtgggtggttcaacgaggacattatttcaacttc |
608 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55178333 |
ggaaataatcataaacagatatcaaagtctcatctctaatgcaaatccctagcagaggagcgatgcgtgggtggttcaacgaggacattatttcaacttc |
55178432 |
T |
|
| Q |
609 |
aagtgcaaaatctttgaaagcttcttttgatgactg |
644 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
55178433 |
aagtgcaaaatctttgaaagcttcttttgatgactg |
55178468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 172
Target Start/End: Original strand, 27670513 - 27670576
Alignment:
| Q |
109 |
tgattacatgtggctcaaacccttcagaaagaagaatgttggaagacttgacgtctctatgtat |
172 |
Q |
| |
|
||||||| |||||||||| | | | |||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
27670513 |
tgattacttgtggctcaagctccttggaaagaagaatgtttgaagacttgacatctctatgtat |
27670576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University