View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7964_low_4 (Length: 416)
Name: NF7964_low_4
Description: NF7964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7964_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 22445226 - 22444830
Alignment:
| Q |
1 |
agtgatttcaactctttaaatgtatattgtatacacatacgtaggaaaaaaccatacatgtctaatgttgacctctttttatttatctacagtctggctg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
22445226 |
agtgatttcaactctttaaatgtatattgtatacacatatgtaggaaaaaaccatacatgtctaatgttgtcctctttttatttatctacagtctggttg |
22445127 |
T |
|
| Q |
101 |
ttgcaaacctccaacagattgtggctatttgtatcaaaacgagacagtatggattcaaggagcaggactagtaggaaccaaccctgactgcaacaaatgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
22445126 |
ttgcaaacctccaacagattgtggctatttgtatcaaaacgagacagtatggattcaaggagcaggactagtgggaacaaaccctgactgcaacaaatgg |
22445027 |
T |
|
| Q |
201 |
aacaatgaccaacaacaactttgttatgattgtgattcttgcaaagctggtgtacttggtagtctcaagaagagttggaggaaagtatctgtgatcaata |
300 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
22445026 |
aacaatgaccaacaacaactttgttatgactgtgattcttgcaaagctggtgtacttggtagtctcaagaagagttggaggaaagtatcagtgatcaata |
22444927 |
T |
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| Q |
301 |
ttgttgttatgatcatccttgtaattgtttacatagttgcttattatgcttatagaaacaacaaaaagatggataatgatgaaccttatggtgaagc |
397 |
Q |
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| T |
22444926 |
ttgttgttatgatcatccttgtaattgtttacatagttgcttattatgcttatagaaacaacaaaaagatggataatgatgaaccttatggtgaagc |
22444830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 225 - 258
Target Start/End: Complemental strand, 10678420 - 10678387
Alignment:
| Q |
225 |
tatgattgtgattcttgcaaagctggtgtacttg |
258 |
Q |
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| T |
10678420 |
tatgattgtgattcttgcaaagctggtgtacttg |
10678387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 258
Target Start/End: Complemental strand, 42969262 - 42969226
Alignment:
| Q |
222 |
tgttatgattgtgattcttgcaaagctggtgtacttg |
258 |
Q |
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|||||||| |||||||| ||||||||||||||||||| |
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| T |
42969262 |
tgttatgagtgtgattcatgcaaagctggtgtacttg |
42969226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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