View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7964_low_5 (Length: 385)
Name: NF7964_low_5
Description: NF7964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7964_low_5 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 3 - 385
Target Start/End: Original strand, 42967389 - 42967772
Alignment:
| Q |
3 |
acgaaatcttgaactgcgtatagaaacaaaacgaaccacttctattcttggagctcctccaatatacgacacctacccacacagatgaatatttggttga |
102 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42967389 |
acgaaattttgaattgcgtatagaaacaaaacgaaccacttctattcttggagctcctccaatatacgacacctacccacatagatgaatatttggttga |
42967488 |
T |
|
| Q |
103 |
atgatgtgtctcctaattaaattgtcggttgtaggtaatcgatttcacagaagatgccaaacaaataaatc-gagtttaagggaacatatgattaattgg |
201 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42967489 |
atgatgtgtctcctaattaagttgtcggttgtaggtaatcgatttcacagaaaatgccaaacaaataaatctgagtttaagggaacatatgattaattgg |
42967588 |
T |
|
| Q |
202 |
ctttgagaatattactagtctattcttagatcacatttagatcaatttgagttgagggactcttgaatttctgtgaatttttcaataattacgagagcct |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
42967589 |
ctttgagaatattactagtctattcttagatcacatttagatcaatttgagttgagggactcttgaatttctgtcaatttttcaataattacgagagcct |
42967688 |
T |
|
| Q |
302 |
tgagctttgtatttgacatgtttgggtcataaaagtttatcttacctgtgtgactagagcatagacacacatagaacttgcatg |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42967689 |
tgagctttgtatttgacatgtttgggtcataaaagtttatcttacctgtgtgactagagcatagacacacatagaacttgcatg |
42967772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 57 - 172
Target Start/End: Complemental strand, 39566755 - 39566638
Alignment:
| Q |
57 |
tcctccaatatacgacacctacccacacagat--gaatatttggttgaatgatgtgtctcctaattaaattgtcggttgtaggtaatcgatttcacagaa |
154 |
Q |
| |
|
||||||| ||||| ||||||||||||||| || |||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||| | ||||| |
|
|
| T |
39566755 |
tcctccattataccacacctacccacacaaatatgaatatttggttgaatgacgtgtctcctaattaagttgtttgttgtaggtaatcgattacgcagaa |
39566656 |
T |
|
| Q |
155 |
gatgccaaacaaataaat |
172 |
Q |
| |
|
|| ||||||||||||||| |
|
|
| T |
39566655 |
gacgccaaacaaataaat |
39566638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 15071955 - 15071901
Alignment:
| Q |
3 |
acgaaatcttgaactgcgtatagaaacaaaacgaaccacttctattcttggagct |
57 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15071955 |
acgaaatcttgaattgcgtatagaaacaaaacgaaccacttctattcttggagct |
15071901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University