View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7964_low_7 (Length: 358)
Name: NF7964_low_7
Description: NF7964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7964_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 47 - 346
Target Start/End: Complemental strand, 34019289 - 34018990
Alignment:
| Q |
47 |
gaagtatcaagtatgtattaaactaaatttaatataggacgagtataagtgtatgtgtatgcttattatcttttacaatgaataaattgaggatagagaa |
146 |
Q |
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| T |
34019289 |
gaagtatcaagtatgtattaaactaaatttaatataggacgagtataagtgtatgtgtatgcttattatcttttacagtgaataaattgaggatagagaa |
34019190 |
T |
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| Q |
147 |
tgacaagaaagttatcatgattcaccaaaattggattattctattccttatagtatgtgagattatccaatatagtgctttgagatacctctcaaacttt |
246 |
Q |
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| T |
34019189 |
tgacaagaaagttatcatgattcaccaaaattggattattctattccttatagtatgtgagattatccaatatagtgctttgagatacctctcaaacttt |
34019090 |
T |
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| Q |
247 |
tgcgctctcttctttttatgttctacatgacattgcaagtagttcacaacctcttcataattttgtaaccacaaggatgattagtgatgcaattgatatt |
346 |
Q |
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| T |
34019089 |
tgcgctctcttctttttatgttctacatgacattgcaagtagttcacaacctcttcataattttgtaaccacaaggatgattagtgatgcaattgatatt |
34018990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 34019316 - 34019276
Alignment:
| Q |
1 |
tgagaagtgattcaaatttgtgaatttgaagtatcaagtat |
41 |
Q |
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| T |
34019316 |
tgagaagtgattcaaatttgtgaatttgaagtatcaagtat |
34019276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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