View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7964_low_8 (Length: 271)
Name: NF7964_low_8
Description: NF7964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7964_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 41752364 - 41752477
Alignment:
| Q |
17 |
atatcacaccaatttattaccaagattcttcctataaatactatcccaccaaaaacttctctgttttaatcctcccctacttctactcttctctctttct |
116 |
Q |
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| T |
41752364 |
atatcacaccaatttattaccaagattcttcctataaatactatcccaccaaaaacttctctgttttaatcctcccctacttctactcttctctcttttt |
41752463 |
T |
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| Q |
117 |
taatttctcccacc |
130 |
Q |
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| T |
41752464 |
taatttctcccacc |
41752477 |
T |
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Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 177 - 254
Target Start/End: Original strand, 41752532 - 41752609
Alignment:
| Q |
177 |
tttagaatcatattcatcttcatccgtgaaactcttattgtttatggttccactcataatagttgctggtctagtttc |
254 |
Q |
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| T |
41752532 |
tttagaatcatattcatcttcatccatgaaactcttattgtttatggttccactcataatagttgctggtctagtttc |
41752609 |
T |
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