View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7965_high_1 (Length: 934)

Name: NF7965_high_1
Description: NF7965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7965_high_1
NF7965_high_1
[»] chr6 (5 HSPs)
chr6 (19-921)||(24465122-24466047)
chr6 (19-97)||(24450900-24450978)
chr6 (512-546)||(8065656-8065690)
chr6 (446-503)||(19218462-19218519)
chr6 (792-852)||(18019477-18019537)
[»] chr4 (7 HSPs)
chr4 (792-852)||(9488142-9488202)
chr4 (792-852)||(30040137-30040197)
chr4 (792-852)||(4546657-4546717)
chr4 (792-852)||(26532206-26532266)
chr4 (792-852)||(28917423-28917483)
chr4 (793-852)||(9538554-9538613)
chr4 (444-503)||(19362441-19362500)
[»] chr8 (8 HSPs)
chr8 (792-852)||(18835940-18836000)
chr8 (436-504)||(20539608-20539676)
chr8 (792-852)||(8370901-8370961)
chr8 (792-852)||(25611789-25611849)
chr8 (792-852)||(26241079-26241139)
chr8 (432-503)||(2963148-2963219)
chr8 (444-503)||(18835381-18835440)
chr8 (791-852)||(21969926-21969987)
[»] chr7 (6 HSPs)
chr7 (792-852)||(47166507-47166567)
chr7 (345-489)||(3132786-3132931)
chr7 (792-852)||(8465593-8465653)
chr7 (792-852)||(18258771-18258831)
chr7 (432-503)||(19393636-19393707)
chr7 (444-503)||(24443539-24443598)
[»] chr5 (4 HSPs)
chr5 (436-503)||(20100455-20100522)
chr5 (792-852)||(20941621-20941681)
chr5 (792-852)||(22941845-22941905)
chr5 (792-852)||(25805033-25805093)
[»] chr2 (5 HSPs)
chr2 (502-571)||(40301073-40301142)
chr2 (792-852)||(24249681-24249741)
chr2 (792-852)||(24763319-24763379)
chr2 (436-503)||(28741238-28741305)
chr2 (409-463)||(24471605-24471659)
[»] scaffold0389 (1 HSPs)
scaffold0389 (792-852)||(756-816)
[»] scaffold0112 (1 HSPs)
scaffold0112 (792-852)||(777-837)
[»] chr3 (7 HSPs)
chr3 (792-852)||(15846184-15846244)
chr3 (345-397)||(16200237-16200289)
chr3 (345-397)||(16200543-16200595)
chr3 (792-852)||(21034832-21034892)
chr3 (792-852)||(21399386-21399446)
chr3 (444-501)||(14147052-14147109)
chr3 (791-852)||(25978375-25978436)
[»] chr1 (4 HSPs)
chr1 (792-852)||(19706087-19706147)
chr1 (792-852)||(28134371-28134431)
chr1 (792-852)||(47667133-47667193)
chr1 (792-850)||(22613086-22613144)
[»] scaffold0031 (1 HSPs)
scaffold0031 (444-503)||(40200-40259)
[»] scaffold0111 (1 HSPs)
scaffold0111 (794-852)||(27138-27196)


Alignment Details
Target: chr6 (Bit Score: 710; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 710; E-Value: 0
Query Start/End: Original strand, 19 - 921
Target Start/End: Complemental strand, 24466047 - 24465122
Alignment:
Q  19 gttgacattaggtttgttcccattattaagttacgaagagtttgtactgcaacgacattcttgttgtcaatatcctgcaagttgatttggtattttagta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24466047 gttgacattaggtttgttcccattattaagttacgaagagtttgtactgcaacgacattcttgttgtcaatatcctgcaagttgatttggtattttagta 24465948  T
Q  119 agtataatttggatgaaataatgaaaggatttttattatataatctt-atacactatacaaaggttgtttatac---------aaataaat--------- 199  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||         ||||||||             
T  24465947 agtataatttggatgaaataatgaaaggatatttattatataatctttatacactatacaaaggttgtttatacaaataaataaaataaattttttttcc 24465848  T
Q  200 ------aaaataatttttgtttcgttttaataaaactatttgtcttttgtgccccnnnnnnnnntgtttgtcttttaatgtagatattgattgttttgat 293  Q
          |||| |||||||||||| |||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||    
T  24465847 ttcaaaaaaaaaatttttgtttctttttaataaaactatttgtcttttgtgccccaaaaaaaa-tgtttgtcttttaatgtagatattgattgttttgat 24465749  T
Q  294 tcaaagatcttaggttatttgatagtgtgtttacaagtttcatcattagttataaggacattattcttaaagtatttgtaatcatgatttaatgtgaaat 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  24465748 tcaaagatcttaggttatttgatagtgtgtttacaagtttcatcattaattataaggacattattcttaaagtatttgtagtcatgatttaatgtgaaat 24465649  T
Q  394 gggaaaatagtaattcatagagactgttatgtgaatttactaatgatcatatctcatgggtcatgaatatgacatataaagtcttcacataagtatgaat 493  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  24465648 gggaaaatagtaattcatagagactgttatatgaatttactaatgatcatatctcatgggtcatgaatatgatatataaagtcttcacataagtatgaat 24465549  T
Q  494 attaggagtataccaaattgacccaccatgagaatactatataatgagttatgtagagtcatgagatattctcatagtaatagttgtattgccaccttcg 593  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||| |||||||    
T  24465548 attaggagtataccaaattgacccaccatgagaatactatatagtgagttatgtagagtcatgagatattctcatagtaatagtggtgttgctaccttcg 24465449  T
Q  594 acgtgaaatcacaataattcctaaatgtggattatagtgctttgttgtcttctcaaacattgtatgtaaaaagatgattataaagccaattgataggcaa 693  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24465448 acgtgaaatcactatgattcctaaatgtggattatagtgctttgttgtcttctcaaacattgtatgtaaaaagatgattataaagccaattgataggcaa 24465349  T
Q  694 tccacgaatcatggtgaatgggatattgaactagacaatgattacatagtctatcccgtgtgttcaataatggcataagggtaaaaggataatatggtat 793  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||| ||||||||||||||||| ||    
T  24465348 tccacgaatcatggtgaatgggatattgaactagacaatgattacatagtctattctg-gtgttcaataatggcataagagtaaaaggataatatggcat 24465250  T
Q  794 tcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatattattaccaacaaggtcacacacataaggacaaatgaatgagac 893  Q
    ||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24465249 tcttgtcactagggtaacagtgatgagttgctagatactactcattgtttataatattattaccaacaaggtcacacacataaggacaaatgaatgagac 24465150  T
Q  894 cttaaataaataagtaaaacttatatat 921  Q
     ||||||||||||||| |||||||||||    
T  24465149 attaaataaataagtagaacttatatat 24465122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 24450978 - 24450900
Alignment:
Q  19 gttgacattaggtttgttcccattattaagttacgaagagtttgtactgcaacgacattcttgttgtcaatatcctgca 97  Q
    |||||||||||| |||||||||||||||||||||| ||| |||| |||||||| |  || |||||||||||||||||||    
T  24450978 gttgacattagggttgttcccattattaagttacgtagactttggactgcaaccaagtttttgttgtcaatatcctgca 24450900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 512 - 546
Target Start/End: Complemental strand, 8065690 - 8065656
Alignment:
Q  512 tgacccaccatgagaatactatataatgagttatg 546  Q
    |||||||||||||||||||||||||||||||||||    
T  8065690 tgacccaccatgagaatactatataatgagttatg 8065656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 446 - 503
Target Start/End: Original strand, 19218462 - 19218519
Alignment:
Q  446 ctcatgggtcatgaatatgacatataaagtcttcacataagtatgaatattaggagta 503  Q
    |||||||||||||||||||| |||| ||||||  ||||| |||| |||||||||||||    
T  19218462 ctcatgggtcatgaatatgagatattaagtctatacatatgtataaatattaggagta 19218519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 792 - 852
Target Start/End: Complemental strand, 18019537 - 18019477
Alignment:
Q  792 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 852  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||||||||||    
T  18019537 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttataatatta 18019477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 792 - 852
Target Start/End: Original strand, 9488142 - 9488202
Alignment:
Q  792 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 852  Q
    |||||||||||| ||||| |||||||| ||||||||||||| | |||||||||||||||||    
T  9488142 attcttgtcacttggatagcaatgatgtgttgctagatactgctcattgtttataatatta 9488202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 792 - 852
Target Start/End: Complemental strand, 30040197 - 30040137
Alignment:
Q  792 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 852  Q
    |||||||||||| ||||| |||||||| |||||||||||| || ||||||||||| |||||    
T  30040197 attcttgtcacttggatagcaatgatgtgttgctagataccactcattgtttatagtatta 30040137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 792 - 852
Target Start/End: Original strand, 4546657 - 4546717
Alignment:
Q  792 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 852  Q
    |||||||||||| ||||| |||||||| ||||||||||||  | ||||||||||| |||||    
T  4546657 attcttgtcacttggatagcaatgatgtgttgctagataccgctcattgtttatagtatta 4546717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 792 - 852
Target Start/End: Original strand, 26532206 - 26532266
Alignment:
Q  792 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 852  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||||||||||    
T  26532206 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttataatatta 26532266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 792 - 852
Target Start/End: Complemental strand, 28917483 - 28917423
Alignment:
Q  792 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 852  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||||||||||    
T  28917483 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttataatatta 28917423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 793 - 852
Target Start/End: Original strand, 9538554 - 9538613
Alignment:
Q  793 ttcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 852  Q
    ||||||||||| |||||||| ||||  ||||||||||||  | |||||||||||||||||    
T  9538554 ttcttgtcacttggataacagtgatctgttgctagataccgctcattgtttataatatta 9538613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 444 - 503
Target Start/End: Original strand, 19362441 - 19362500
Alignment:
Q  444 atctcatgggtcatgaatatgacatataaagtcttcacataagtatgaatattaggagta 503  Q
    |||||||||||||||||||||| |||| || |||  ||||| |||| |||||||||||||    
T  19362441 atctcatgggtcatgaatatgagatattaaatctatacataggtattaatattaggagta 19362500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 792 - 852
Target Start/End: Original strand, 18835940 - 18836000
Alignment:
Q  792 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 852  Q
    |||||||||||| || || |||||||| ||||||||||||||  |||||||||||||||||    
T  18835940 attcttgtcacttgggtagcaatgatgtgttgctagatactagtcattgtttataatatta 18836000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 436 - 504
Target Start/End: Complemental strand, 20539676 - 20539608
Alignment:
Q  436 atgatcatatctcatgggtcatgaatatgacatataaagtcttcacataagtatgaatattaggagtat 504  Q
    ||||||| |||||||||||||||||||||| |||| |||| |  |||||||||| ||||||| ||||||    
T  20539676 atgatcacatctcatgggtcatgaatatgagatattaagtgtatacataagtataaatattaagagtat 20539608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 792 - 852
Target Start/End: Complemental strand, 8370961 - 8370901
Alignment:
Q  792 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 852  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||||||||||    
T  8370961 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttataatatta 8370901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 792 - 852
Target Start/End: Original strand, 25611789 - 25611849
Alignment:
Q  792 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 852  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||||||||||    
T  25611789 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttataatatta 25611849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 792 - 852
Target Start/End: Original strand, 26241079 - 26241139
Alignment:
Q  792 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 852  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||||||||||    
T  26241079 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttataatatta 26241139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 432 - 503
Target Start/End: Complemental strand, 2963219 - 2963148
Alignment:
Q  432 actaatgatcatatctcatgggtcatgaatatgacatataaagtcttcacataagtatgaatattaggagta 503  Q
    |||||||| | |||||||||||| || ||||||| |||| ||||||  ||||| |||| |||||||||||||    
T  2963219 actaatgaccgtatctcatgggttataaatatgagatattaagtctatacataggtataaatattaggagta 2963148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 444 - 503
Target Start/End: Original strand, 18835381 - 18835440
Alignment:
Q  444 atctcatgggtcatgaatatgacatataaagtcttcacataagtatgaatattaggagta 503  Q
    ||||||||||||||  |||||| |||| ||||||  |||||||||| |||||||||||||    
T  18835381 atctcatgggtcatagatatgagatattaagtctatacataagtataaatattaggagta 18835440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 791 - 852
Target Start/End: Original strand, 21969926 - 21969987
Alignment:
Q  791 tattcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 852  Q
    ||||||||||||| ||||| ||||| || ||||||||||||  | || ||||||||||||||    
T  21969926 tattcttgtcacttggatagcaatggtgtgttgctagataccgctcaatgtttataatatta 21969987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 792 - 852
Target Start/End: Complemental strand, 47166567 - 47166507
Alignment:
Q  792 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 852  Q
    |||||||||||| || || |||||||| ||||||||||||| | |||||||||||||||||    
T  47166567 attcttgtcacttgggtagcaatgatgtgttgctagatactgctcattgtttataatatta 47166507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 345 - 489
Target Start/End: Original strand, 3132786 - 3132931
Alignment:
Q  345 ataaggacattattcttaaagtatttgtaatcatgatttaatgtgaaatgggaaaatagtaattcatagagactgttatgtgaatttactaatgatcata 444  Q
    |||||| ||||||| | |||||||||||||||  | |||| |  ||| ||| ||||||||||| ||||||||||   |||||| |  ||| ||||||| |    
T  3132786 ataaggtcattattatgaaagtatttgtaatctagttttacttggaattggaaaaatagtaatgcatagagactacaatgtgattagactgatgatcaca 3132885  T
Q  445 tctcatgggtca-tgaatatgacatataaagtcttcacataagtat 489  Q
    |||||| | | | ||||||||| |||| ||||||||||||| ||||    
T  3132886 tctcatagataaatgaatatgagatatcaagtcttcacatatgtat 3132931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 792 - 852
Target Start/End: Original strand, 8465593 - 8465653
Alignment:
Q  792 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 852  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||||||||||    
T  8465593 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttataatatta 8465653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 792 - 852
Target Start/End: Complemental strand, 18258831 - 18258771
Alignment:
Q  792 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 852  Q
    |||||||||||| || ||||||||||| ||||||||||||  | ||||||||||| |||||    
T  18258831 attcttgtcacttgggtaacaatgatgtgttgctagataccgctcattgtttatagtatta 18258771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 432 - 503
Target Start/End: Complemental strand, 19393707 - 19393636
Alignment:
Q  432 actaatgatcatatctcatgggtcatgaatatgacatataaagtcttcacataagtatgaatattaggagta 503  Q
    |||||||| || || ||||||||||| ||||||| |||| ||||||  ||||| |||| |||||||||||||    
T  19393707 actaatgaccacatttcatgggtcataaatatgagatattaagtctatacataggtataaatattaggagta 19393636  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 444 - 503
Target Start/End: Complemental strand, 24443598 - 24443539
Alignment:
Q  444 atctcatgggtcatgaatatgacatataaagtcttcacataagtatgaatattaggagta 503  Q
    |||||||||||||||||||| | |||| |||| |  ||||| ||||||||||||||||||    
T  24443598 atctcatgggtcatgaatataagatattaagtttatacataggtatgaatattaggagta 24443539  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 436 - 503
Target Start/End: Complemental strand, 20100522 - 20100455
Alignment:
Q  436 atgatcatatctcatgggtcatgaatatgacatataaagtcttcacataagtatgaatattaggagta 503  Q
    ||||||| |||||||||||||||||||||| |||| ||||||  | ||| |||| |||||||||||||    
T  20100522 atgatcacatctcatgggtcatgaatatgagatattaagtctatagataggtatcaatattaggagta 20100455  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 792 - 852
Target Start/End: Original strand, 20941621 - 20941681
Alignment:
Q  792 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 852  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||||||||||    
T  20941621 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttataatatta 20941681  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 792 - 852
Target Start/End: Original strand, 22941845 - 22941905
Alignment:
Q  792 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 852  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||||||||||    
T  22941845 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttataatatta 22941905  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 792 - 852
Target Start/End: Complemental strand, 25805093 - 25805033
Alignment:
Q  792 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 852  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||||||||||    
T  25805093 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttataatatta 25805033  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 502 - 571
Target Start/End: Complemental strand, 40301142 - 40301073
Alignment:
Q  502 tataccaaattgacccaccatgagaatactatataatgagttatgtagagtcatgagatattctcatagt 571  Q
    ||||||| ||||||||||||||||||||||| ||||   |||||| || ||||| ||||| |||||||||    
T  40301142 tataccagattgacccaccatgagaatactacataacatgttatgaagtgtcataagatagtctcatagt 40301073  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 792 - 852
Target Start/End: Complemental strand, 24249741 - 24249681
Alignment:
Q  792 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 852  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||||||||||    
T  24249741 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttataatatta 24249681  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 792 - 852
Target Start/End: Complemental strand, 24763379 - 24763319
Alignment:
Q  792 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 852  Q
    |||| ||||||| | |||||||||||| ||||||||||||  | |||||||||||||||||    
T  24763379 attcgtgtcacttgaataacaatgatgtgttgctagatacggctcattgtttataatatta 24763319  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 436 - 503
Target Start/End: Complemental strand, 28741305 - 28741238
Alignment:
Q  436 atgatcatatctcatgggtcatgaatatgacatataaagtcttcacataagtatgaatattaggagta 503  Q
    ||||||| |||||||| ||||||||||||| |||| |||| |  ||||| |||| |||||||||||||    
T  28741305 atgatcacatctcatgcgtcatgaatatgagatattaagtatgtacataggtataaatattaggagta 28741238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 409 - 463
Target Start/End: Complemental strand, 24471659 - 24471605
Alignment:
Q  409 catagagactgttatgtgaatttactaatgatcatatctcatgggtcatgaatat 463  Q
    |||| ||||| |||||||||| || |||||| || ||||||||||||||||||||    
T  24471659 cataaagactattatgtgaatataataatgaccacatctcatgggtcatgaatat 24471605  T

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Target: scaffold0389 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0389
Description:

Target: scaffold0389; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 792 - 852
Target Start/End: Original strand, 756 - 816
Alignment:
Q  792 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 852  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||||||||||    
T  756 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttataatatta 816  T

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Target: scaffold0112 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 792 - 852
Target Start/End: Original strand, 777 - 837
Alignment:
Q  792 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 852  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||||||||||    
T  777 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttataatatta 837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 792 - 852
Target Start/End: Complemental strand, 15846244 - 15846184
Alignment:
Q  792 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 852  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||||||||||    
T  15846244 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttataatatta 15846184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 16200237 - 16200289
Alignment:
Q  345 ataaggacattattcttaaagtatttgtaatcatgatttaatgtgaaatggga 397  Q
    ||||||||||||||||||||||||| ||| ||| |||||| |||||| |||||    
T  16200237 ataaggacattattcttaaagtattcgtagtcaagatttattgtgaagtggga 16200289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 16200543 - 16200595
Alignment:
Q  345 ataaggacattattcttaaagtatttgtaatcatgatttaatgtgaaatggga 397  Q
    ||||||||||||||||||||||||| ||| ||| |||||| |||||| |||||    
T  16200543 ataaggacattattcttaaagtattcgtagtcaagatttattgtgaagtggga 16200595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 792 - 852
Target Start/End: Original strand, 21034832 - 21034892
Alignment:
Q  792 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 852  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||||||||||    
T  21034832 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttataatatta 21034892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 792 - 852
Target Start/End: Original strand, 21399386 - 21399446
Alignment:
Q  792 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 852  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||||||||||    
T  21399386 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttataatatta 21399446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 444 - 501
Target Start/End: Original strand, 14147052 - 14147109
Alignment:
Q  444 atctcatgggtcatgaatatgacatataaagtcttcacataagtatgaatattaggag 501  Q
    ||||||||||||||| |||||| |||| ||||||  ||||| |||| |||||||||||    
T  14147052 atctcatgggtcatggatatgagatattaagtctatacatatgtataaatattaggag 14147109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 791 - 852
Target Start/End: Complemental strand, 25978436 - 25978375
Alignment:
Q  791 tattcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 852  Q
    ||||||||||||| || | ||||||||| ||||||||||||  | ||||||||||| |||||    
T  25978436 tattcttgtcacttgggtgacaatgatgtgttgctagataccgctcattgtttatagtatta 25978375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 792 - 852
Target Start/End: Complemental strand, 19706147 - 19706087
Alignment:
Q  792 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 852  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||||||||||    
T  19706147 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttataatatta 19706087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 792 - 852
Target Start/End: Complemental strand, 28134431 - 28134371
Alignment:
Q  792 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 852  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||||||||||    
T  28134431 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttataatatta 28134371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 792 - 852
Target Start/End: Complemental strand, 47667193 - 47667133
Alignment:
Q  792 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 852  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||||||||||    
T  47667193 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttataatatta 47667133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 792 - 850
Target Start/End: Original strand, 22613086 - 22613144
Alignment:
Q  792 attcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatat 850  Q
    |||||||||||| || || |||||||| ||||||||||||  | |||||||||||||||    
T  22613086 attcttgtcacttgggtagcaatgatgtgttgctagataccgctcattgtttataatat 22613144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 444 - 503
Target Start/End: Complemental strand, 40259 - 40200
Alignment:
Q  444 atctcatgggtcatgaatatgacatataaagtcttcacataagtatgaatattaggagta 503  Q
    ||||||||||||||| |||||| |||| ||||||  ||||| |||| |||||||||||||    
T  40259 atctcatgggtcatggatatgagatattaagtctatacataggtataaatattaggagta 40200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 794 - 852
Target Start/End: Original strand, 27138 - 27196
Alignment:
Q  794 tcttgtcactaggataacaatgatgagttgctagatactacccattgtttataatatta 852  Q
    |||||||||| || || |||||||| ||||||||||||  | |||||||||||||||||    
T  27138 tcttgtcacttggttagcaatgatgtgttgctagatacctctcattgtttataatatta 27196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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