View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7965_high_17 (Length: 302)
Name: NF7965_high_17
Description: NF7965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7965_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 12493229 - 12492938
Alignment:
| Q |
1 |
aaatattaatttatgaataataatacttgttttagaaatgatgta-----taatgataatgctaggaagccattgttcccagaagcaaattacatagttg |
95 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
12493229 |
aaatattaatttatgaatagtaatacttgttttagaaatgatgtaatgtataatgataatgctagcaagccattgttcccataagcaaattacatagttg |
12493130 |
T |
|
| Q |
96 |
tttatgttgaatacatactctctctagaacaccctcttcttactatggttaatcaacagtggaaggtgtgaaactaagttgaattttcaggatgtaatca |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
12493129 |
tttatgttgaatacatactctctctagaacaccctcttcttactatggttaatcaacagtggagggtgtgaaactaagttgaattttcaggatgtaatca |
12493030 |
T |
|
| Q |
196 |
attccatggagaaagagggagagaaaggtgagtttgagtttggtgcttatgttggtagcataagcatgatgtgggaggaggtggttgttagt |
287 |
Q |
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| T |
12493029 |
attccatggagaaagagggagagaaaggtgagtttgagtttggtgcttatgttggtagcgtaagcatgatgtgggaggaggtggctgttagt |
12492938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 36956687 - 36956717
Alignment:
| Q |
1 |
aaatattaatttatgaataataatacttgtt |
31 |
Q |
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| T |
36956687 |
aaatattaatttatgaataataatacttgtt |
36956717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 132
Target Start/End: Original strand, 47304244 - 47304297
Alignment:
| Q |
79 |
agcaaattacatagttgtttatgttgaatacatactctctctagaacaccctct |
132 |
Q |
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|||||||| |||||||||| ||||||||||| |||| ||| |||||||||||| |
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| T |
47304244 |
agcaaattcaatagttgtttctgttgaatacagactcgctccagaacaccctct |
47304297 |
T |
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