View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7965_high_3 (Length: 672)
Name: NF7965_high_3
Description: NF7965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7965_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 570; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 15 - 657
Target Start/End: Original strand, 29525184 - 29525825
Alignment:
| Q |
15 |
attgattcatatctagattaccaacaagaggtatctagtgaaggtcaagttattgacagttcagttaccataccagaagttgctagttgtggaagtgatc |
114 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29525184 |
attgattcatatctagataaccaacaagaggtatctagtgaaggtcaagttattgacagttcagttaccataccagaagttgctagttgtggaagtgatc |
29525283 |
T |
|
| Q |
115 |
aaggtgtagtagacattatacttgaagaaaattcagtaaatgttgtagcatcgtaaaggannnnnnnaatccatatatatggacaatggcaataacatca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
29525284 |
aaggtgtagtagacattatacttgaagaaaattcagtaaatgttgtagcatcgtaaaggatttgtttaatccatatatatggacaatggcaataacatca |
29525383 |
T |
|
| Q |
215 |
caggaactcggaaacaatttcaacactgtacacccaacaccgtataaaataacaatttcaatgtgttcggattccgaggaacaaatgaattaatataaaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||| |||||||||||||||||| |
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| T |
29525384 |
caggaactcggaaacaatttcaacactgtacacccaacaccgtatagaataacaatttcaatttgttcggattacgaggaaaaaatgaattaatataaaa |
29525483 |
T |
|
| Q |
315 |
tcagaaaccgtatagaatgtgcaagaaatacaatgtgtctgatgacgaattctgagttctaaaagacatttttggcggaaataaagaattataaacagta |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
29525484 |
tcagaaaccgtatagaatgtgcaagaaatacaatgtgtctgatgacgaattctgagttctaaaagacatttttggcagaaataaagaattataaacagta |
29525583 |
T |
|
| Q |
415 |
acagtaaacaagaaaactataaattcctacagaataagaattataaggaacatttaaacagagggaagagataagaccagagattgttaacaaagttcag |
514 |
Q |
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||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29525584 |
acagt-aacaagaaaactataaattcctacagaacaagaattataaggaacatttaaacagagggaagagataagaccagagattgttaacaaaattcag |
29525682 |
T |
|
| Q |
515 |
ataattgttttcccacatccctgagatatataattgagcttttacacatctagagcaccatcattgattctcctttaagaatcagtatgaatccctcaat |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
29525683 |
ataattgttttcccacatccctgagatatataattgagtttttacacatctagagcaccatcattgattctcctttaagaatcactatgaatccctcaat |
29525782 |
T |
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| Q |
615 |
caatactcttaccatttcttgctgttaatcttatctgattctt |
657 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||| |
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| T |
29525783 |
caatactcttaccatttcttgcggttaatcttatctgattctt |
29525825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 170
Target Start/End: Original strand, 29612982 - 29613137
Alignment:
| Q |
15 |
attgattcatatctagattaccaacaagaggtatctagtgaaggtcaagttattgacag---ttcagttaccataccagaagttgctagttgtggaagtg |
111 |
Q |
| |
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||||| ||||||| ||||| |||| |||||||||||||||||||||||| |||| || | ||||| | ||||| |||| ||||||||| |||| ||| |
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| T |
29612982 |
attgagtcatatccagattgccaaaaagaggtatctagtgaaggtcaagatattcactgttcttcagattccataacagaggttgctagtgatggaggtg |
29613081 |
T |
|
| Q |
112 |
atcaaggtgtagtagacattatacttgaagaaaattcagtaaatgttgtagcatcgtaa |
170 |
Q |
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||| | | ||||||||||||| |||| |||||| ||| ||||||||||| |||| |
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| T |
29613082 |
atctacat---gtagacattatacatgaaacaaattctataagtgttgtagcattgtaa |
29613137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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