View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7965_high_7 (Length: 477)
Name: NF7965_high_7
Description: NF7965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7965_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 273 - 459
Target Start/End: Original strand, 33499719 - 33499905
Alignment:
| Q |
273 |
cccaggatctccttcttattccttctcctttgtttatgttggtcttgacacgtcaaacctcaccttgcatacttcccaaaccgaagtccccagttgggtg |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33499719 |
cccaggatctccttcttattccttctcctttgtttatgttggtcttgacacgtcaaacctcaccttgcatacttcccaaaccgaagtccccagttgggtg |
33499818 |
T |
|
| Q |
373 |
atttcttgagtgtttcctacatcctgacgctatttacaaacttcccaaaaataacaacttcaaaacatttttatcgtccatcgattg |
459 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33499819 |
atttcttgagtgtttcctacatcctgacgctatttacaaacttcccaaaaataacaacttcaaaacatttttatcgtccatcgattg |
33499905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 23 - 226
Target Start/End: Original strand, 33499515 - 33499722
Alignment:
| Q |
23 |
aggcaaaacaagcttattaaccttattattaggtgaacctcttctataaatagtttggttaaaccttatatgt--ccttccctttgctatctacttcctc |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
33499515 |
aggcaaaacaagcttattaaccttattattaggtgaacctcttctataaatagtttggttaaaccttatatgtgtccttccctttgctatctacttcctc |
33499614 |
T |
|
| Q |
121 |
tcttacttgcttacatgcgtagtg--ctttctcttaatcttgtaacttattccaagcactctcatttttaccaaaccctaatttcacattgtatttatct |
218 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33499615 |
tcttacttgcttacatgcgtagtgtgctttctcttaatcttgtaacttattccaagcactctcatttttaccaaaccctaatttcacattgtatttatct |
33499714 |
T |
|
| Q |
219 |
gattccca |
226 |
Q |
| |
|
|||||||| |
|
|
| T |
33499715 |
gattccca |
33499722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University