View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7965_low_10 (Length: 417)
Name: NF7965_low_10
Description: NF7965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7965_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 14 - 398
Target Start/End: Original strand, 50448926 - 50449316
Alignment:
| Q |
14 |
cagagatgaggtaagttaagtataaccaat--------cagccaggattcgaaggcacaagagatgttatttgttcaaaagaatctaagaaatatactga |
105 |
Q |
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| T |
50448926 |
cagagatgaggtaagttaagtataaccaatgattatatcagccaggattcgaaggcacaagagatgttatttgttcaaaagaatctaggaaatatactga |
50449025 |
T |
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| Q |
106 |
aaagaaaaaccatttaaatttttactagaggacatagtagtcgtatatttagccaaataagtatacaagcatgctctaaatatatcccatacactgctaa |
205 |
Q |
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| T |
50449026 |
aaagaaaaaccatttaaattt--actagaggacatagtagtcgtatatttagcaaaataagtatacaagcatgctctaaatatatcccatacactgctaa |
50449123 |
T |
|
| Q |
206 |
aggaagggtttgcctaaacttttcattaaatggtagagtaattgatccgctcagacatttcccttacaaaaacttacccttcaaatagtaggctttaaca |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
50449124 |
aggaagggtttgcctaaacttttcattaaatggtagagtaattgatctgctcagacatttcccttacaaaaacttacctttcaaatagtaggctttaaca |
50449223 |
T |
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| Q |
306 |
acttaatgataggaacaaaagacatgtattatcttatgtttcacaatttgaagtccatcactaccaaagtagttcatgaatgtaagtggttgc |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
50449224 |
acttaatgataggaacaaaagacatgtattatcttatgtttcacaatttgaagtccatcactaccaaagtagctcatgaatataagtggttgc |
50449316 |
T |
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