View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7965_low_11 (Length: 407)

Name: NF7965_low_11
Description: NF7965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7965_low_11
NF7965_low_11
[»] chr8 (1 HSPs)
chr8 (32-389)||(24248205-24248560)
[»] chr2 (1 HSPs)
chr2 (278-386)||(11267608-11267716)
[»] chr7 (1 HSPs)
chr7 (278-364)||(35726318-35726404)
[»] chr4 (2 HSPs)
chr4 (180-275)||(11528084-11528178)
chr4 (221-275)||(11458527-11458581)
[»] chr6 (2 HSPs)
chr6 (353-389)||(1487238-1487274)
chr6 (223-275)||(1487345-1487397)
[»] chr3 (1 HSPs)
chr3 (319-386)||(8252304-8252368)


Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 32 - 389
Target Start/End: Complemental strand, 24248560 - 24248205
Alignment:
Q  32 tattctcttagttgtaattgattttatctttagaaaaaattaagtcgattaccttgttgtgttgttgaggttttatcgaactaattttgtcaattttgtc 131  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |  ||||||||||||||||    
T  24248560 tattctcttcgttgtaattgattttatctttagaaaaaattaagttgattaccttgttgtgttgttgaggttttatcgaaatttttttgtcaattttgtc 24248461  T
Q  132 ctaaagaattatatatatcatgttgtgcagcgtaatttattctctttgtgtaatattttcagttctctttgacatgttttttatagttggcttggtattt 231  Q
    ||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  24248460 ctaaagaattatatatatcatgttgtgcagcgtaaattattctct--gtgtaatattttcagttctctttgacatgttttctatagttggcttggtattt 24248363  T
Q  232 gatcagttgatctatctgaaattgcggatcattttgttcagtttagggttttttaaaatcgtggcgatctataatgcacttagtttggttctcttgtgca 331  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  24248362 gatcggttgatctatctgaaattgcggatcattttattcagtttagggtttttcaaaatcgtggcgatctataatgcacttaatttggttctcttgtgca 24248263  T
Q  332 tgggttattttaaaagatcggaacaacatgatttttaataataaaggaagctctaatt 389  Q
    ||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||    
T  24248262 tgggttatttggaaagatcggaacagcatgatttttaataataaaggaagctctaatt 24248205  T

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Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 278 - 386
Target Start/End: Original strand, 11267608 - 11267716
Alignment:
Q  278 ggttttttaaaatcgtggcgatctataatgcacttagtttggttctcttgtgcatgggttattttaaaagatcggaacaacatgatttttaataataaag 377  Q
    ||||||| ||||| |  ||| ||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  11267608 ggtttttcaaaattgcagcggtctataatgcacttagtttggttttcttgtgcattggttatttgaaaagatcggaacaacatgatttttaataataaag 11267707  T
Q  378 gaagctcta 386  Q
    |||||||||    
T  11267708 gaagctcta 11267716  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 278 - 364
Target Start/End: Original strand, 35726318 - 35726404
Alignment:
Q  278 ggttttttaaaatcgtggcgatctataatgcacttagtttggttctcttgtgcatgggttattttaaaagatcggaacaacatgatt 364  Q
    ||||||| ||||||||| || |||||||| ||||||||||||||||||||||| ||  |||||| ||||||| | | ||||||||||    
T  35726318 ggtttttcaaaatcgtgacggtctataatacacttagtttggttctcttgtgcttgcattatttgaaaagattgtagcaacatgatt 35726404  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 180 - 275
Target Start/End: Original strand, 11528084 - 11528178
Alignment:
Q  180 tgtaatattttcagttctctttgacatgttttttatagttggcttggtatttgatcagttgatctatctgaaattgcggatcattttgttcagttt 275  Q
    ||||||||||  ||||||||||| ||| || | |  | |||||||||| ||| ||||||||||| ||||| |||||||||||||||||||||||||    
T  11528084 tgtaatatttatagttctctttggcatcttgtatgcaattggcttggttttt-atcagttgatccatctggaattgcggatcattttgttcagttt 11528178  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 275
Target Start/End: Complemental strand, 11458581 - 11458527
Alignment:
Q  221 gcttggtatttgatcagttgatctatctgaaattgcggatcattttgttcagttt 275  Q
    ||||||| ||| ||| ||||||| ||||| |||||||||||||||||||||||||    
T  11458581 gcttggtttttcatctgttgatccatctggaattgcggatcattttgttcagttt 11458527  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 353 - 389
Target Start/End: Complemental strand, 1487274 - 1487238
Alignment:
Q  353 aacaacatgatttttaataataaaggaagctctaatt 389  Q
    ||||||||||||||||||| |||||||||||||||||    
T  1487274 aacaacatgatttttaatagtaaaggaagctctaatt 1487238  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 1487397 - 1487345
Alignment:
Q  223 ttggtatttgatcagttgatctatctgaaattgcggatcattttgttcagttt 275  Q
    ||||||||| ||| ||||||||| ||||||||||  |||||||||||||||||    
T  1487397 ttggtatttcatcggttgatctagctgaaattgcatatcattttgttcagttt 1487345  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 386
Target Start/End: Original strand, 8252304 - 8252368
Alignment:
Q  319 gttctcttgtgcatgggttattttaaaagatcggaacaacatgatttttaataataaaggaagctcta 386  Q
    ||||||||||||||| ||||||| |||| |||  |||||   |||||||||||||| |||||||||||    
T  8252304 gttctcttgtgcatgagttatttgaaaacatcataacaa---gatttttaataatagaggaagctcta 8252368  T

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