View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7965_low_17 (Length: 317)
Name: NF7965_low_17
Description: NF7965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7965_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 45068428 - 45068128
Alignment:
| Q |
1 |
tgaatcagaatggcctaaattatcttttttaccatcttatggaagagaaaaagatgcacctgatggaaggtttagtagtctcatttttggaactaacctc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45068428 |
tgaatcagaatggcctaaattatcttttttaccatcttatggaagagaaaaagatgcacctgatggaaggtttagtagtctcatttttggaactaacctc |
45068329 |
T |
|
| Q |
101 |
actgatgttgtaattaccggtaactatttgcataaattaatagctattaaaatttatcaaacttcaattaaaatttgatctattgaattttctacataag |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45068328 |
actgatgttgtaattaccggtaactatttgcataaattaatagctattaaaatttatcaaacttcaattaaaatttgatctattgaattttctacataag |
45068229 |
T |
|
| Q |
201 |
gtaacaatgggacaattgatggacaaggatctacttggtgggagaagttccacaagggtcaaatgaaaatcactaggccatacatgattgagattatgta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
45068228 |
gtaacaatgggacaattgatggacaaggatctacttggtgggacaagttccaaaagaaacaattgaaaatcactaggccatatatgattgagattatgta |
45068129 |
T |
|
| Q |
301 |
t |
301 |
Q |
| |
|
| |
|
|
| T |
45068128 |
t |
45068128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 45076053 - 45075745
Alignment:
| Q |
1 |
tgaatcagaatggcctaaattatcttttttaccatcttatggaagagaaaaagatgcacctgatggaaggtttagtagtctcatttttggaactaacctc |
100 |
Q |
| |
|
|||||||||||||||| |||| || ||||||| ||||||||||| | || ||||| |||||||||||||||| |||||| ||||||||||||||||| |
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| T |
45076053 |
tgaatcagaatggcctcaattccctgttttaccttcttatggaagtggaaggaatgcatctgatggaaggtttagcagtctcgtttttggaactaacctc |
45075954 |
T |
|
| Q |
101 |
actgatgttgtaattaccggtaactatttgcataaattaatagctat--------taaaatttatcaaacttcaattaaaatttgatctattgaattttc |
192 |
Q |
| |
|
||||||||| ||||||| ||||||||||| ||||||| |||||||| |||||||| |||| ||| ||||||||||||||||||||||||| |
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| T |
45075953 |
actgatgttataattactggtaactatttagataaattgatagctatgccattattaaaatttgtcaagcttatattaaaatttgatctattgaattttg |
45075854 |
T |
|
| Q |
193 |
tacataaggtaacaatgggacaattgatggacaaggatctacttggtgggagaagttccacaagggtcaaatgaaaatcactaggccatacatgattgag |
292 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
45075853 |
ttcataaggtaacaatgggacaattgatggacaaggatcttattggtgggacaagttccacaagggacaaatgaaaatcactaggccatacatgattgag |
45075754 |
T |
|
| Q |
293 |
attatgtat |
301 |
Q |
| |
|
||||||||| |
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|
| T |
45075753 |
attatgtat |
45075745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 28 - 301
Target Start/End: Complemental strand, 45083456 - 45083175
Alignment:
| Q |
28 |
tttaccatcttatggaagagaaaaagatgcacctgatggaaggtttagtagtctcatttttggaactaacctcactgatgttgtaattaccggtaactat |
127 |
Q |
| |
|
|||||||||||||||||||| || ||| |||| |||||||||||| ||||||||||||||||||||||||| ||||||| | ||||| ||||||||| |
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|
| T |
45083456 |
tttaccatcttatggaagaggaagagaaaagcctggtggaaggtttagcagtctcatttttggaactaacctcattgatgttattattactggtaactat |
45083357 |
T |
|
| Q |
128 |
ttgcataaattaatagcta--------ttaaaatttatcaaacttcaattaaaatttgatctattgaattttctacataaggtaacaatgggacaattga |
219 |
Q |
| |
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|| ||||| ||||||||| ||||||| | | || || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45083356 |
ttagataaagtaatagctaagccattattaaaatgtgttaatgttatattaaaatttgatctattgaattttctacataaggtaacaatgggacaattga |
45083257 |
T |
|
| Q |
220 |
tggacaaggatctacttggtgggagaagttccacaagggtcaaatgaaaatcactaggccatacatgattgagattatgtat |
301 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||| ||| ||||||||||||||||||| |||||||||||||||||| |
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|
| T |
45083256 |
tggacaaggatctacttggtgggacaagttccaaaagaaacaattgaaaatcactaggccatatatgattgagattatgtat |
45083175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 45079164 - 45079037
Alignment:
| Q |
1 |
tgaatcagaatggcctaaattatctt-ttttaccatcttatggaagagaaaaagatgcacctgatggaaggtttagtagtctcatttttggaactaacct |
99 |
Q |
| |
|
|||||||||||||||| || | |||| ||||||||||||||||||| | || ||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
45079164 |
tgaatcagaatggcctcaact-tcttgttttaccatcttatggaaggggaagagatgcacctgctggaaggtttagtagtctcatttttggaactaacct |
45079066 |
T |
|
| Q |
100 |
cactgatgttgtaattaccggtaactatt |
128 |
Q |
| |
|
|||||| || | ||||||||||| |||| |
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|
| T |
45079065 |
cactgacgtgattattaccggtaattatt |
45079037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 198 - 301
Target Start/End: Complemental strand, 45078953 - 45078850
Alignment:
| Q |
198 |
aaggtaacaatgggacaattgatggacaaggatctacttggtgggagaagttccacaagggtcaaatgaaaatcactaggccatacatgattgagattat |
297 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||| || ||||||||| ||| ||| | ||||||| |||||||||||||||||||| |
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|
| T |
45078953 |
aaggtgacaatgggacaattgatggacaaggatcatattggtgggacaaattccacaagaaacaattgacactcactagaccatacatgattgagattat |
45078854 |
T |
|
| Q |
298 |
gtat |
301 |
Q |
| |
|
|||| |
|
|
| T |
45078853 |
gtat |
45078850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 196 - 301
Target Start/End: Complemental strand, 34505652 - 34505547
Alignment:
| Q |
196 |
ataaggtaacaatgggacaattgatggacaaggatctacttggtgggagaagttccacaagggtcaaatgaaaatcactaggccatacatgattgagatt |
295 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||||| ||||| || || ||| |||||||||||||||||||||||||||||||| |
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|
| T |
34505652 |
ataaggtaacaacgggacaattgatggacaaggatcatattggtgggacaagtttcataataaacaattgaaaatcactaggccatacatgattgagatt |
34505553 |
T |
|
| Q |
296 |
atgtat |
301 |
Q |
| |
|
||||| |
|
|
| T |
34505552 |
ttgtat |
34505547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 128
Target Start/End: Complemental strand, 34505833 - 34505733
Alignment:
| Q |
28 |
tttaccatcttatggaagagaaaaagatgcacctgatggaaggtttagtagtctcatttttggaactaacctcactgatgttgtaattaccggtaactat |
127 |
Q |
| |
|
|||||||||||||||||| | || ||||||||||| | ||||||||||||||||||||| |||||| ||||||| || ||| ||||||||||||| ||| |
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|
| T |
34505833 |
tttaccatcttatggaaggggaagagatgcacctggtccaaggtttagtagtctcattttcggaactcacctcaccgacgttataattaccggtaattat |
34505734 |
T |
|
| Q |
128 |
t |
128 |
Q |
| |
|
| |
|
|
| T |
34505733 |
t |
34505733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 205 - 299
Target Start/End: Complemental strand, 17588071 - 17587977
Alignment:
| Q |
205 |
caatgggacaattgatggacaaggatctacttggtgggagaagttccacaagggtcaaatgaaaatcactaggccatacatgattgagattatgt |
299 |
Q |
| |
|
|||||| ||||||||||| ||||| ||| ||||||| | ||||||||||| | | || ||||| |||| ||||||||| ||||||||||||||| |
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|
| T |
17588071 |
caatggaacaattgatggtcaaggttcttattggtggaacaagttccacaaagatgaattgaaactcaccaggccatacttgattgagattatgt |
17587977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 64 - 111
Target Start/End: Original strand, 41333176 - 41333223
Alignment:
| Q |
64 |
tggaaggtttagtagtctcatttttggaactaacctcactgatgttgt |
111 |
Q |
| |
|
|||||||| ||| ||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
41333176 |
tggaaggtatagcagtctaatttttggaaccaacctcactgatgttgt |
41333223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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