View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7965_low_18 (Length: 317)

Name: NF7965_low_18
Description: NF7965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7965_low_18
NF7965_low_18
[»] chr5 (2 HSPs)
chr5 (20-151)||(36735297-36735428)
chr5 (220-294)||(36735499-36735573)
[»] chr3 (5 HSPs)
chr3 (23-115)||(22795723-22795815)
chr3 (34-115)||(22784293-22784374)
chr3 (34-115)||(22786086-22786167)
chr3 (34-115)||(22788657-22788738)
chr3 (71-115)||(22794012-22794056)
[»] chr8 (2 HSPs)
chr8 (34-115)||(5611360-5611441)
chr8 (34-115)||(5613153-5613234)


Alignment Details
Target: chr5 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 20 - 151
Target Start/End: Original strand, 36735297 - 36735428
Alignment:
Q  20 aaccatacatatggttttctccatgggtctcgaatttttgcacaattacaaccatattttgtcttcctcacgcagcggtaacgaatttccttcgttgcac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36735297 aaccatacatatggttttctccatgggtctcgaatttttgcacaattacaaccatattttgtcttcctcacgcagcggtaacgaatttccttcgttgcac 36735396  T
Q  120 ttggttttgccttcactcgacacattgttggc 151  Q
    ||||||||||||||||||||||||| ||||||    
T  36735397 ttggttttgccttcactcgacacatcgttggc 36735428  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 220 - 294
Target Start/End: Original strand, 36735499 - 36735573
Alignment:
Q  220 tcgcttatgaaagagggagatataaatatcatttctcaacataccttctctatcaacaaaaagaatatcagttta 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  36735499 tcgcttatgaaagagggagatataaatatcatttctcaacataccttctctgtcaacaaaaagaatatctgttta 36735573  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 115
Target Start/End: Original strand, 22795723 - 22795815
Alignment:
Q  23 catacatatggttttctccatgggtctcgaatttttgcacaattacaaccatattttgtcttcctcacgcagcggtaacgaatttccttcgtt 115  Q
    |||||||| | ||||||||||||||||| |||||  ||||  |  |  ||||||||||||||||||||||  | |||||||||||||||||||    
T  22795723 catacataagcttttctccatgggtctcaaatttccgcaccgtatctgccatattttgtcttcctcacgcctcagtaacgaatttccttcgtt 22795815  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 115
Target Start/End: Original strand, 22784293 - 22784374
Alignment:
Q  34 ttttctccatgggtctcgaatttttgcacaattacaaccatattttgtcttcctcacgcagcggtaacgaatttccttcgtt 115  Q
    ||||||||||||||||| |||||  ||||  |  |  |||| |||||||||||||| ||  |||||||||||||||||||||    
T  22784293 ttttctccatgggtctcaaatttccgcaccgtatctgccattttttgtcttcctcaagcctcggtaacgaatttccttcgtt 22784374  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 115
Target Start/End: Original strand, 22786086 - 22786167
Alignment:
Q  34 ttttctccatgggtctcgaatttttgcacaattacaaccatattttgtcttcctcacgcagcggtaacgaatttccttcgtt 115  Q
    ||||||||||||||||| |||||  ||||  |  |  |||| ||| |||||||||||||  |||||||||||||||||||||    
T  22786086 ttttctccatgggtctcaaatttccgcaccgtatctgccatttttcgtcttcctcacgcctcggtaacgaatttccttcgtt 22786167  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 115
Target Start/End: Original strand, 22788657 - 22788738
Alignment:
Q  34 ttttctccatgggtctcgaatttttgcacaattacaaccatattttgtcttcctcacgcagcggtaacgaatttccttcgtt 115  Q
    ||||||||||||||||| |||||  ||||  |  |  |||| |||||||||||||| ||  |||||||||||||||||||||    
T  22788657 ttttctccatgggtctcaaatttccgcaccgtatctgccattttttgtcttcctcaagcctcggtaacgaatttccttcgtt 22788738  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 22794012 - 22794056
Alignment:
Q  71 ccatattttgtcttcctcacgcagcggtaacgaatttccttcgtt 115  Q
    |||| ||| |||||||||||||  |||||||||||||||||||||    
T  22794012 ccatttttcgtcttcctcacgcctcggtaacgaatttccttcgtt 22794056  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 115
Target Start/End: Complemental strand, 5611441 - 5611360
Alignment:
Q  34 ttttctccatgggtctcgaatttttgcacaattacaaccatattttgtcttcctcacgcagcggtaacgaatttccttcgtt 115  Q
    ||||||||||||||||| |||||  ||||  |  |  |||| ||| |||||||||||||  |||||||||||||||||||||    
T  5611441 ttttctccatgggtctcaaatttccgcaccgtatctgccatttttcgtcttcctcacgcctcggtaacgaatttccttcgtt 5611360  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 115
Target Start/End: Complemental strand, 5613234 - 5613153
Alignment:
Q  34 ttttctccatgggtctcgaatttttgcacaattacaaccatattttgtcttcctcacgcagcggtaacgaatttccttcgtt 115  Q
    ||||||||||||||||| |||||  ||||  |  |  |||| |||||||||||||| ||  |||||||||||||||||||||    
T  5613234 ttttctccatgggtctcaaatttccgcaccgtatctgccattttttgtcttcctcaagcctcggtaacgaatttccttcgtt 5613153  T

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