View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7965_low_20 (Length: 304)
Name: NF7965_low_20
Description: NF7965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7965_low_20 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 22 - 304
Target Start/End: Original strand, 7278625 - 7278910
Alignment:
| Q |
22 |
tcaccttcctcatcttcaccacccccctccttcatcaaaaaattatattct---ttcacacatttaccctcgctaccatcctcattcatcaaaggtccca |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7278625 |
tcaccttcctcatcttcaccacccccctccttcatcaaaaaatgatcttcttctttcacacatttaccctcgctaccatcctcattcatcaaaggtccca |
7278724 |
T |
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| Q |
119 |
ttttttcacctccctcattcttctcttcacaccccctctcttctttctccatacaattcacctcgccatcctcattcaccaaagcttcaattttattacc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7278725 |
ttttttcacctccctcattcttctcttcacaccccctctcttctttctccatacaattcacctcaccatcctcattcaccaaagcttcaattttattacc |
7278824 |
T |
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| Q |
219 |
accctcattctcctcttcacaccccacctcttccttctccaaacaattctcttcaacctcaacacacttaccttcaccgccttcaa |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7278825 |
accctcattctcctcttcacaccccacctcttccttctccaaacaattctcttcaacctcaacacacttaccttcaccgccttcaa |
7278910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 22 - 304
Target Start/End: Complemental strand, 7375214 - 7374929
Alignment:
| Q |
22 |
tcaccttcctcatcttcaccacccccctccttcatcaaaaaattatattctt---tcacacatttaccctcgctaccatcctcattcatcaaaggtccca |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7375214 |
tcaccttcctcatcttcaccacccccctccttcatcaaaaaatgatcttcttctttcacacatttaccctcgctaccatcctcattcatcaaaggtccca |
7375115 |
T |
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| Q |
119 |
ttttttcacctccctcattcttctcttcacaccccctctcttctttctccatacaattcacctcgccatcctcattcaccaaagcttcaattttattacc |
218 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7375114 |
ttttttcacctccctcattcttctcttcataccccctctcttctttctccatacaattcacctcgccatcctcattcaccaaagcttcaattttattacc |
7375015 |
T |
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| Q |
219 |
accctcattctcctcttcacaccccacctcttccttctccaaacaattctcttcaacctcaacacacttaccttcaccgccttcaa |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7375014 |
accctcattctcctcttcacaccccacctcttccttctccaaacaattctcttcaacctcaacacacttaccttcaccgccttcaa |
7374929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 170
Target Start/End: Original strand, 7278543 - 7278593
Alignment:
| Q |
120 |
tttttcacctccctcattcttctcttcacaccccctctcttctttctccat |
170 |
Q |
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|||||||||||||||||||| ||| | ||||||||| ||||||| |||||| |
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| T |
7278543 |
tttttcacctccctcattctcctccttacaccccctatcttcttcctccat |
7278593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 170
Target Start/End: Complemental strand, 7375296 - 7375246
Alignment:
| Q |
120 |
tttttcacctccctcattcttctcttcacaccccctctcttctttctccat |
170 |
Q |
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| T |
7375296 |
tttttcacctccctcattctcctccttacaccccctatcttcttcctccat |
7375246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 7278520 - 7278576
Alignment:
| Q |
187 |
tcctcattcaccaaagcttcaattttattaccaccctcattctcctcttcacacccc |
243 |
Q |
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||||||||| |||||||||||| ||| | ||| |||||||||||||| | ||||||| |
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| T |
7278520 |
tcctcattccccaaagcttcaaatttttcacctccctcattctcctccttacacccc |
7278576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 7375319 - 7375263
Alignment:
| Q |
187 |
tcctcattcaccaaagcttcaattttattaccaccctcattctcctcttcacacccc |
243 |
Q |
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||||||||| |||||||||||| ||| | ||| |||||||||||||| | ||||||| |
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| T |
7375319 |
tcctcattccccaaagcttcaaatttttcacctccctcattctcctccttacacccc |
7375263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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