View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7965_low_23 (Length: 283)
Name: NF7965_low_23
Description: NF7965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7965_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 31688512 - 31688782
Alignment:
| Q |
1 |
ataagccattgttgcactaagtttcagcaaattgtcctatatttttcgtcatgaaactatgtaatacttcatttgaaatgaaatataagcaaaaatcata |
100 |
Q |
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| T |
31688512 |
ataagccattgttgcactaagtttcagcaaattgtcctatttttttcgtcatgaaactatgtaatacttcatttgaaatgaaatataagcaaaattcata |
31688611 |
T |
|
| Q |
101 |
gttgagttaaaaatttagtccatatatatccaacttttcaactactattttttgcttattgatttatctatttcaatttattttaactgctacatccctg |
200 |
Q |
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| T |
31688612 |
gttgagttaaaaatttagtccatatatatccaacttttcaactacta-tttttgcttattgatttatctatttcaatttattttaactgctacatccctc |
31688710 |
T |
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| Q |
201 |
ttaaaaatttggagacaatattgaagatgaatagtagatataaaatggataaggttaatggaaaagtaaagg |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31688711 |
ttaaaaatttggagacaatattgaagatgaatagtagatataaaatggataaggttaatggaaaagtaaagg |
31688782 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 159
Target Start/End: Original strand, 12559005 - 12559055
Alignment:
| Q |
107 |
ttaaaaatttagtccatatatatccaacttttcaactactattttttgcttat |
159 |
Q |
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| T |
12559005 |
ttaaaaatttagtccatatacat-caacttttcaactac-cttttttgcttat |
12559055 |
T |
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