View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7965_low_24 (Length: 281)
Name: NF7965_low_24
Description: NF7965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7965_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 2 - 265
Target Start/End: Complemental strand, 28675558 - 28675296
Alignment:
| Q |
2 |
gattaataagtggcatacttgtttggaatcaagcatgtatgtttttctgagtnnnnnnnnnncagatagtctttttaataggttaatgtaattaacaagg |
101 |
Q |
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| T |
28675558 |
gattaataagtggcatacttgtttggaatcaagcatgtatgtttttctgagtaaaaaaaaa-cagatagtctttttaataggttaatgtaactaacaagg |
28675460 |
T |
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| Q |
102 |
acaaatcggaaatgcttcttatctagttgctttattaaatcaagttatgccaataatttggttgtccttttatgcagagcatcttaggaaacaatgatac |
201 |
Q |
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| T |
28675459 |
acaaatcggaaatgcttcttctctagttgctttattaaatcaagttatgacaataatttgattgtccttttatgcagagcatcttaggaaacaatgatac |
28675360 |
T |
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| Q |
202 |
ttctctctttcttccatcaactcgtcttgaatcccttcattttgaatccatgagacaaagttcc |
265 |
Q |
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| T |
28675359 |
ctccctctttcttccatcaactcgtctcgaatcccttcattttgaatccatgagacaaagttcc |
28675296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 201
Target Start/End: Complemental strand, 28651570 - 28651478
Alignment:
| Q |
110 |
gaaatgcttcttatctagttgctttattaaa-tcaagttatgccaataatttggttgtccttttatgcagagcatcttaggaaacaatgatac |
201 |
Q |
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| T |
28651570 |
gaaatgcttcttatctagttgctttattaaattcaaattaggtcaaaaatatagttgtccttttatgcggagtattctaggaaacaatgatac |
28651478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 141
Target Start/End: Complemental strand, 28642879 - 28642850
Alignment:
| Q |
112 |
aatgcttcttatctagttgctttattaaat |
141 |
Q |
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| T |
28642879 |
aatgcttcttatctagttgctttattaaat |
28642850 |
T |
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