View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7965_low_25 (Length: 266)
Name: NF7965_low_25
Description: NF7965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7965_low_25 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 28 - 266
Target Start/End: Complemental strand, 45068694 - 45068456
Alignment:
| Q |
28 |
tgttggtgatggaaaaacccttaacacaaaagcatttaattcagcaataaccaatcttagccaatatgcaaatgatggtggtgcacaacttattgttcca |
127 |
Q |
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| T |
45068694 |
tgttggtgacggcaaaacccttaacacaaaggcatttaattcagcaataaccaatcttagccaatatgcaaatgatggtggtgcacaacttattgttcca |
45068595 |
T |
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| Q |
128 |
ccaggtaaatggctaacaggaagtttcaatctcacaagccatttcaccctttttctccaaaaagatgctgtcattcttgcatctcaggtataatataaag |
227 |
Q |
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| T |
45068594 |
ccaggtaaatggctaacaggaagcttcaatctcacaagccatttcactctttttctccaaaagggtgctgtcattcttgcatctcaggtataatataaag |
45068495 |
T |
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| Q |
228 |
acttttgttttgtagtattttttaaaattttataatcaa |
266 |
Q |
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| T |
45068494 |
acttttgttttgtagtattttttaaaattttataatcaa |
45068456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 45083754 - 45083555
Alignment:
| Q |
20 |
tttggaggtgttggtgatggaaaaacccttaacacaaaagcatttaattcagcaataaccaatcttagccaatatgcaaatgatggtggtgcacaactta |
119 |
Q |
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| T |
45083754 |
tttggtggtgttggtgatggaaaaacccttaacacaaaggcatttaattcagcaataaccaatcttagccaatatgcaaatgatggtggtgcacaactta |
45083655 |
T |
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| Q |
120 |
ttgttccaccaggtaaatggctaacaggaagtttcaatctcacaagccatttcaccctttttctccaaaaagatgctgtcattcttgcatctcaggtata |
219 |
Q |
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| T |
45083654 |
ttgttccaccaggtaaatggctaactggaagcttcaatctcacaagccatttcactctttttctccaaaaagatgctgtcattcttgcatctcaggtata |
45083555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 45076339 - 45076140
Alignment:
| Q |
20 |
tttggaggtgttggtgatggaaaaacccttaacacaaaagcatttaattcagcaataaccaatcttagccaatatgcaaatgatggtggtgcacaactta |
119 |
Q |
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| T |
45076339 |
tttggtggtgttggtgatggaaaaacccttaacacaaaggcatttaattcagcaataaccaatcttagccaatatgcaaatgatggtggtgcacaactta |
45076240 |
T |
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| Q |
120 |
ttgttccaccaggtaaatggctaacaggaagtttcaatctcacaagccatttcaccctttttctccaaaaagatgctgtcattcttgcatctcaggtata |
219 |
Q |
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| T |
45076239 |
ttgttccaccaggtaaatggctaaccggaagcttcaatctcacaagccatttcactctttttctccaaaaagattctgtcattcttgcatctcaggtata |
45076140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 28 - 219
Target Start/End: Complemental strand, 45079455 - 45079264
Alignment:
| Q |
28 |
tgttggtgatggaaaaacccttaacacaaaagcatttaattcagcaataaccaatcttagccaatatgcaaatgatggtggtgcacaacttattgttcca |
127 |
Q |
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| T |
45079455 |
tgttggtgatggcaaaacccttaacacaaaagcttttaatgcagcaataaccaaccttagccaatatgcaaatgatggtggtgcacaacttattgttcca |
45079356 |
T |
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| Q |
128 |
ccaggtaaatggctaacaggaagtttcaatctcacaagccatttcaccctttttctccaaaaagatgctgtcattcttgcatctcaggtata |
219 |
Q |
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| T |
45079355 |
ccaggtaaatggctaaccggaagcttcaatctcacaagccatttcactctttttctccaaaaagatgctgttattcttggatctcaggtata |
45079264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 34506135 - 34505937
Alignment:
| Q |
20 |
tttggaggtgttggtgatggaaaaacccttaacacaaaagcatttaattcagcaataaccaatcttagccaatatgcaaatgatggtggtgcacaactta |
119 |
Q |
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| T |
34506135 |
tttggtggtgttggtgatggaaaaacctctaacacaaaagcttttaatactgcaataaccaaacttagccagtatgcaaatgatggtggtgcacaactta |
34506036 |
T |
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| Q |
120 |
ttgttccaccaggtaaatggctaacaggaagtttcaatctcacaagccatttcaccctttttctccaaaaagatgctgtcattcttgcatctcaggtat |
218 |
Q |
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| T |
34506035 |
ttgttccaccaggtaaatggttaactggaagcttcaatctcacaagccatttcactctttttctccaaaaaggcgcggtcattcttggatctcaggtat |
34505937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 217
Target Start/End: Complemental strand, 13609407 - 13609315
Alignment:
| Q |
125 |
ccaccaggtaaatggctaacaggaagtttcaatctcacaagccatttcaccctttttctccaaaaagatgctgtcattcttgcatctcaggta |
217 |
Q |
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| T |
13609407 |
ccaccaggaaactggcttactggtagtttcaatcttaccagccatctcaccctctttttggaaaaaggtgctgtcattattggatctcaggta |
13609315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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