View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7965_low_27 (Length: 251)

Name: NF7965_low_27
Description: NF7965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7965_low_27
NF7965_low_27
[»] chr3 (1 HSPs)
chr3 (17-251)||(8377546-8377777)
[»] chr8 (4 HSPs)
chr8 (17-251)||(7094024-7094255)
chr8 (17-251)||(7097757-7097988)
chr8 (32-206)||(29822683-29822855)
chr8 (45-81)||(454010-454046)
[»] chr5 (4 HSPs)
chr5 (30-145)||(37627307-37627421)
chr5 (17-206)||(37806403-37806590)
chr5 (101-145)||(14276281-14276325)
chr5 (45-85)||(33614583-33614623)
[»] chr7 (3 HSPs)
chr7 (17-145)||(2187970-2188095)
chr7 (17-144)||(19632809-19632933)
chr7 (55-144)||(1608754-1608842)
[»] chr1 (1 HSPs)
chr1 (17-145)||(41313840-41313965)
[»] chr2 (1 HSPs)
chr2 (45-210)||(19215546-19215714)
[»] scaffold0070 (1 HSPs)
scaffold0070 (45-81)||(58871-58907)
[»] chr4 (1 HSPs)
chr4 (45-85)||(11992047-11992087)


Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 8377777 - 8377546
Alignment:
Q  17 atatgcaagacctctcaatccaggcatgaaacaacaatttatactcacaaccaagcaatacaaaatcaatttatactaacaaaataagcatgatacaata 116  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8377777 atatgcaagacctc--aatccaggcatgaaacaacaatttatactcacaaccaagcaatacaaaatcaatttatactaacaaaataagcatgatacaata 8377680  T
Q  117 cataaacatgttaaaaacatcatccttttnnnnnnnncaagtaagtacatatataaaatnnnnnnntggagcgccctttcccttgccttaacaacaacag 216  Q
    |||||||||||||||||||||||||||||        ||||||| ||||||||||||||       |||||||||||||||||| ||||||||||| |||    
T  8377679 cataaacatgttaaaaacatcatcctttt-ataaaaacaagtaaatacatatataaaataaaaaaatggagcgccctttcccttaccttaacaacagcag 8377581  T
Q  217 ctcttaagatttccaccaacagtctttactctatc 251  Q
    |||||||||||||||||||||||||||||||||||    
T  8377580 ctcttaagatttccaccaacagtctttactctatc 8377546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 7094024 - 7094255
Alignment:
Q  17 atatgcaagacctctcaatccaggcatgaaacaacaatttatactcacaaccaagcaatacaaaatcaatttatactaacaaaataagcatgatacaata 116  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||   |||  |   ||||||||||||||||    
T  7094024 atatgcaagacctc--aatccaggcatgaaacaacaatttatactcacaaccaagcaatacaaaatcaagttcacctagtatg-taagcatgatacaata 7094120  T
Q  117 cataaacatgttaaaaacatcatccttttnnnnnnnncaagtaagtacatatataaaatnnnnnnntggagcgccctttcccttgccttaacaacaacag 216  Q
    |||||||||||||||||||||||||||||        ||||||| ||||||||||||||       |||||||||||||||||| ||||||||| | |||    
T  7094121 cataaacatgttaaaaacatcatccttttaaaaaaaacaagtaaatacatatataaaataaaaaaatggagcgccctttcccttaccttaacaatagcag 7094220  T
Q  217 ctcttaagatttccaccaacagtctttactctatc 251  Q
    |||||||||||||||||||||||||||||||||||    
T  7094221 ctcttaagatttccaccaacagtctttactctatc 7094255  T

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Target: chr8; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 7097757 - 7097988
Alignment:
Q  17 atatgcaagacctctcaatccaggcatgaaacaacaatttatactcacaaccaagcaatacaaaatcaatttatactaacaaaataagcatgatacaata 116  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||   |||  |   ||||||||||||||||    
T  7097757 atatgcaagacctc--aatccaggcatgaaacaacaatttatactcacaaccaagcaatacaaaatcaagttcacctagtatg-taagcatgatacaata 7097853  T
Q  117 cataaacatgttaaaaacatcatccttttnnnnnnnncaagtaagtacatatataaaatnnnnnnntggagcgccctttcccttgccttaacaacaacag 216  Q
    |||||||||||||||||||||||||||||        ||||||| ||||||||||||||       |||||||||||||||||| ||||||||| | |||    
T  7097854 cataaacatgttaaaaacatcatccttttaaaaaaaacaagtaaatacatatataaaataaaaaaatggagcgccctttcccttaccttaacaatagcag 7097953  T
Q  217 ctcttaagatttccaccaacagtctttactctatc 251  Q
    |||||||||||||||||||||||||||||||||||    
T  7097954 ctcttaagatttccaccaacagtctttactctatc 7097988  T

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Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 32 - 206
Target Start/End: Complemental strand, 29822855 - 29822683
Alignment:
Q  32 caatccaggcatgaaacaacaatttatactcacaaccaagcaatacaaaatcaatttatactaacaaaataagcatgatacaatacataaacatgttaaa 131  Q
    ||||||| |||||||||||||| | ||||||||||||||||||||||||||||| ||  ||  |  |  |||||||||||||||||||||||||||||||    
T  29822855 caatccaagcatgaaacaacaagtcatactcacaaccaagcaatacaaaatcaagtt-cacatagtatgtaagcatgatacaatacataaacatgttaaa 29822757  T
Q  132 aacatcatccttttnnnnnnnncaagtaagtacatatataaaatnnnnnnntggagcgccctttcccttgcctta 206  Q
    |||| |||||||||        ||||||| ||||||||||||||       |||||||||||||||||| |||||    
T  29822756 aacaccatcctttt-aaaaaaacaagtaaatacatatataaaataaaaaaatggagcgccctttcccttacctta 29822683  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 454010 - 454046
Alignment:
Q  45 aaacaacaatttatactcacaaccaagcaatacaaaa 81  Q
    ||||||||| ||||| |||||||||||||||||||||    
T  454010 aaacaacaagttatattcacaaccaagcaatacaaaa 454046  T

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Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 30 - 145
Target Start/End: Original strand, 37627307 - 37627421
Alignment:
Q  30 ctcaatccaggcatgaaacaacaatttatactcacaaccaagcaatacaaaatcaatttatactaacaaaataagcatgatacaatacataaacatgtta 129  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||  ||  |  |  |||||||||||||||||||||||||||||    
T  37627307 ctcaatcaaggcatgaaacaacaatttatactcacaaccaagcaatataaaatcaagtt-cacatagtatgtaagcatgatacaatacataaacatgtta 37627405  T
Q  130 aaaacatcatcctttt 145  Q
    ||||||||||||||||    
T  37627406 aaaacatcatcctttt 37627421  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 37806403 - 37806590
Alignment:
Q  17 atatgcaagacctctcaatccaggcatgaaacaacaatttatactcacaaccaagcaatacaaaatcaatttatactaacaaaataagcatgatacaata 116  Q
    ||||||||||||||  ||||||||||||||| ||||| ||||||||||||| ||||||||||||||||| ||  ||  |  |  ||||||||||||||||    
T  37806403 atatgcaagacctc--aatccaggcatgaaataacaagttatactcacaacaaagcaatacaaaatcaagtt-cacatagtatgtaagcatgatacaata 37806499  T
Q  117 cataaacatgttaaaaacatcatcctttt-nnnnnnnncaagtaagtacatatataaaatnnnnnnntggagcgccctttcccttgcctta 206  Q
    ||||||||||| |||||||||||||||||         ||||||| ||||||||||||||       |||||||||||||||||| |||||    
T  37806500 cataaacatgtcaaaaacatcatccttttaaaaaaaaacaagtaaatacatatataaaataaaaaaatggagcgccctttcccttacctta 37806590  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 14276281 - 14276325
Alignment:
Q  101 taagcatgatacaatacataaacatgttaaaaacatcatcctttt 145  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||    
T  14276281 taagcatggtacaatacataaacatgttaaaaacatcatcatttt 14276325  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 33614583 - 33614623
Alignment:
Q  45 aaacaacaatttatactcacaaccaagcaatacaaaatcaa 85  Q
    ||||||||| |||||||||||||||| ||||||||||||||    
T  33614583 aaacaacaaattatactcacaaccaaacaatacaaaatcaa 33614623  T

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Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 2188095 - 2187970
Alignment:
Q  17 atatgcaagacctctcaatccaggcatgaaacaacaatttatactcacaaccaagcaatacaaaatcaatttatactaacaaaataagcatgatacaata 116  Q
    ||||||||||||||  |||||| |||||||||||||| |||||||||||||||| |||||||||||||| ||  ||  |  |  ||||||||||||||||    
T  2188095 atatgcaagacctc--aatccaagcatgaaacaacaagttatactcacaaccaatcaatacaaaatcaagtt-cacatagtatgtaagcatgatacaata 2187999  T
Q  117 cataaacatgttaaaaacatcatcctttt 145  Q
    |||||||||||||||||||||| ||||||    
T  2187998 cataaacatgttaaaaacatcaccctttt 2187970  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 19632809 - 19632933
Alignment:
Q  17 atatgcaagacctctcaatccaggcatgaaacaacaatttatactcacaaccaagcaatacaaaatcaatttatactaacaaaataagcatgatacaata 116  Q
    ||||||||||||||  |||||| |||||||||||||| ||||||||||||| ||||||||||||||||| ||  ||  |  |  ||||||||||||||||    
T  19632809 atatgcaagacctc--aatccaagcatgaaacaacaagttatactcacaacgaagcaatacaaaatcaagtt-cacatagtatgtaagcatgatacaata 19632905  T
Q  117 cataaacatgttaaaaacatcatccttt 144  Q
     |||||||||||||||||||||||||||    
T  19632906 tataaacatgttaaaaacatcatccttt 19632933  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 55 - 144
Target Start/End: Original strand, 1608754 - 1608842
Alignment:
Q  55 ttatactcacaaccaagcaatacaaaatcaatttatactaacaaaataagcatgatacaatacataaacatgttaaaaacatcatccttt 144  Q
    ||||||||||||||||||||||||||||||| ||  ||  |  |  ||||||||||||||||||||||||||||||||||||||||||||    
T  1608754 ttatactcacaaccaagcaatacaaaatcaaattc-acatagtatgtaagcatgatacaatacataaacatgttaaaaacatcatccttt 1608842  T

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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 41313840 - 41313965
Alignment:
Q  17 atatgcaagacctctcaatccaggcatgaaacaacaatttatactcacaaccaagcaatacaaaatcaatttatactaacaaaataagcatgatacaata 116  Q
    ||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||  ||  |  |  |||||||| || ||||    
T  41313840 atatgcaagacctc--aatccaggcatgaaacaacaagttatactcacaaccaagcaatacaaaatcaagtt-cacatagtatgtaagcatggtaaaata 41313936  T
Q  117 cataaacatgttaaaaacatcatcctttt 145  Q
    | |||||||||||||||||||||| ||||    
T  41313937 cttaaacatgttaaaaacatcatcatttt 41313965  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 210
Target Start/End: Complemental strand, 19215714 - 19215546
Alignment:
Q  45 aaacaacaatttatactcacaaccaagcaatacaaaatcaatttatactaaca------aaataagcatgatacaatacataaacatgttaaaaacatca 138  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||    || ||      |  |||||||| |||||||| ||||||||||||||||||||    
T  19215714 aaacaacaagttatactcacaaccaagcaatacaaaatcaagttcacatagcacatagtatgtaagcatggtacaatacttaaacatgttaaaaacatca 19215615  T
Q  139 tccttttnnnnnnnncaagtaagtacatatataaaatnnnnnnntggagcgccctttcccttgccttaacaa 210  Q
    || ||||        ||||||| ||||||||||||||       |||||||||||||||||| |||||||||    
T  19215614 tcatttt---aacaacaagtaaatacatatataaaatagaaaaatggagcgccctttcccttaccttaacaa 19215546  T

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Target: scaffold0070 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 58871 - 58907
Alignment:
Q  45 aaacaacaatttatactcacaaccaagcaatacaaaa 81  Q
    ||||||||| ||||| |||||||||||||||||||||    
T  58871 aaacaacaagttatattcacaaccaagcaatacaaaa 58907  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 11992047 - 11992087
Alignment:
Q  45 aaacaacaatttatactcacaaccaagcaatacaaaatcaa 85  Q
    ||||||| | ||||||||||| |||||||||||||||||||    
T  11992047 aaacaacgaattatactcacagccaagcaatacaaaatcaa 11992087  T

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