View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7965_low_28 (Length: 249)
Name: NF7965_low_28
Description: NF7965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7965_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 18557614 - 18557413
Alignment:
| Q |
18 |
ccaatcatcaactcggttaatacccttgctgcttcgtggagaccaaatcaacccttctatcatcccactgaacttgtttatcttatctcccaagatcgat |
117 |
Q |
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| T |
18557614 |
ccaatcatcaactcggttaatacccttgctgcttcgtggagaccaaatcaacccttctatcatcccactgaacttgtttatcttatctcccaagatcgat |
18557515 |
T |
|
| Q |
118 |
agctccctccatcctctttgaccacgcatcatctcatccactcttagaaaagcttgttgaagagatgttcctatatctccttcatgaccatcataaacac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18557514 |
agctccctccatcctctttgaccacgcatcatctcatccactcttagaaaagcttgttgaagagatgttcctatatctccttcatgaccatcataaacac |
18557415 |
T |
|
| Q |
218 |
ca |
219 |
Q |
| |
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|| |
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|
| T |
18557414 |
ca |
18557413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 48833789 - 48833650
Alignment:
| Q |
18 |
ccaatcatcaactcggttaatacccttgctgcttcgtggagaccaaatcaacccttctatcatcccactgaacttgtttatcttatctcccaagatcgat |
117 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
48833789 |
ccaatcatcaactcggttaataccattgctgcttcgtggagaccaaatcaacccttctatcatcccactgaacttgtttatcttatctcccaagattgat |
48833690 |
T |
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| Q |
118 |
agctccctccatcctctttgaccacgcatcatctcatcca |
157 |
Q |
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| T |
48833689 |
agctccctccatcctctttgaccacgcatcatctcatcca |
48833650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 197
Target Start/End: Complemental strand, 48833135 - 48833098
Alignment:
| Q |
160 |
cttagaaaagcttgttgaagagatgttcctatatctcc |
197 |
Q |
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| T |
48833135 |
cttagaaaagcttgttgaagagaggttcctatatctcc |
48833098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 157
Target Start/End: Complemental strand, 3079658 - 3079548
Alignment:
| Q |
47 |
tgcttcgtggagaccaaatcaacccttctatcatcccactgaacttgtttatcttatctcccaagatcgatagctccctccatcctctttgaccacgcat |
146 |
Q |
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|||||| |||||||| |||||| ||||| || || ||| ||||| |||| |||||| || |||| | || ||||||||||| |||||||||||||| |
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| T |
3079658 |
tgcttcttggagaccgaatcaatccttcaattattccattgaacccttttaccttatcacctaagactgctaattccctccatcccctttgaccacgcat |
3079559 |
T |
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| Q |
147 |
catctcatcca |
157 |
Q |
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||||||||||| |
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| T |
3079558 |
catctcatcca |
3079548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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