View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7965_low_29 (Length: 240)

Name: NF7965_low_29
Description: NF7965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7965_low_29
NF7965_low_29
[»] chr3 (1 HSPs)
chr3 (1-224)||(8377268-8377514)
[»] chr8 (2 HSPs)
chr8 (1-224)||(7094287-7094533)
chr8 (1-224)||(7098020-7098266)
[»] chr1 (7 HSPs)
chr1 (91-224)||(22362495-22362628)
chr1 (54-224)||(33885881-33886052)
chr1 (54-224)||(33958200-33958371)
chr1 (1-60)||(33886074-33886133)
chr1 (1-60)||(33958119-33958178)
chr1 (65-192)||(41314476-41314605)
chr1 (69-189)||(14097475-14097600)
[»] chr4 (1 HSPs)
chr4 (53-224)||(11993047-11993217)
[»] chr7 (5 HSPs)
chr7 (65-192)||(2186875-2187003)
chr7 (67-192)||(19633140-19633266)
chr7 (65-192)||(1609045-1609172)
chr7 (134-224)||(48189040-48189127)
chr7 (135-224)||(21270164-21270250)
[»] chr5 (3 HSPs)
chr5 (65-192)||(37627611-37627740)
chr5 (65-192)||(37806734-37806863)
chr5 (52-132)||(14276864-14276942)
[»] scaffold0627 (1 HSPs)
scaffold0627 (148-185)||(2963-3000)


Alignment Details
Target: chr3 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 8377514 - 8377268
Alignment:
Q  1 gttttagagttgatctttgttctcatttctttctcctgcaagactcactatgtttctatc----------------------tattttcttcaaagtgta 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                      ||||||||||| ||||||    
T  8377514 gttttagagttgatctttgttctcatttctttctcctgcaagactcactatgtttctatccctctctctctaaatttctctctattttcttcagagtgta 8377415  T
Q  79 gaatcagtaaag-ggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttcctaaaagagtggcac 177  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8377414 gaatcagtaaagtggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttcctaaaagagtggcac 8377315  T
Q  178 tatgcttaaggaatgtgcagtgaaattgaccaatgtaactaggaaag 224  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||    
T  8377314 tatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaaag 8377268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 7094287 - 7094533
Alignment:
Q  1 gttttagagttgatctttgttctcatttctttctcctgcaagactcactatgtttctatc----------------------tattttcttcaaagtgta 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||                      ||||||||||| ||||||    
T  7094287 gttttagagttgatctttgttctcatttctttctcctgcaagactctctatgtttctatccctctctctctaaatttctctctattttcttcagagtgta 7094386  T
Q  79 gaatcagtaaag-ggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttcctaaaagagtggcac 177  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7094387 gaatcagtaaagtggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttcctaaaagagtggcac 7094486  T
Q  178 tatgcttaaggaatgtgcagtgaaattgaccaatgtaactaggaaag 224  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||    
T  7094487 tatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaaag 7094533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 7098020 - 7098266
Alignment:
Q  1 gttttagagttgatctttgttctcatttctttctcctgcaagactcactatgtttctatc----------------------tattttcttcaaagtgta 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||                      ||||||||||| ||||||    
T  7098020 gttttagagttgatctttgttctcatttctttctcctgcaagactctctatgtttctatccctctctctctaaatttctctctattttcttcagagtgta 7098119  T
Q  79 gaatcagtaaag-ggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttcctaaaagagtggcac 177  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7098120 gaatcagtaaagtggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttcctaaaagagtggcac 7098219  T
Q  178 tatgcttaaggaatgtgcagtgaaattgaccaatgtaactaggaaag 224  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||    
T  7098220 tatgcttaaggagtgtgaagtgaaattgaccaatgtaactaggaaag 7098266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 91 - 224
Target Start/End: Complemental strand, 22362628 - 22362495
Alignment:
Q  91 ggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttcctaaaagagtggcactatgcttaaggaa 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  22362628 ggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttcctaaaagagtggcactatgcttaaggag 22362529  T
Q  191 tgtgcagtgaaattgaccaatgtaactaggaaag 224  Q
    |||| |||||||||||||||||||||||||||||    
T  22362528 tgtgaagtgaaattgaccaatgtaactaggaaag 22362495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 54 - 224
Target Start/End: Complemental strand, 33886052 - 33885881
Alignment:
Q  54 ttctatctattttcttcaaagtgtagaatcagtaaag-ggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccact 152  Q
    |||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  33886052 ttctctctattttcttcagagtgtagaatcagtaaagtggtgaatgaatggaataaagaaggtaaccgatttttattaatcgtgaaataaccctcccact 33885953  T
Q  153 aactcccttcct-aaaagagtggcactatgcttaaggaatgtgcagtgaaattgaccaatgtaactaggaaag 224  Q
    |||||||||||| ||||||||||||||||||||||||| |||| |||||||||| || |||||||||||||||    
T  33885952 aactcccttcctaaaaagagtggcactatgcttaaggagtgtgaagtgaaattggcc-atgtaactaggaaag 33885881  T

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Target: chr1; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 54 - 224
Target Start/End: Original strand, 33958200 - 33958371
Alignment:
Q  54 ttctatctattttcttcaaagtgtagaatcagtaaag-ggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccact 152  Q
    |||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  33958200 ttctctctattttcttcagagtgtagaatcagtaaagtggtgaatgaatggaataaagaaggtaaccgatttttattaatcgtgaaataaccctcccact 33958299  T
Q  153 aactcccttcct-aaaagagtggcactatgcttaaggaatgtgcagtgaaattgaccaatgtaactaggaaag 224  Q
    |||||||||||| ||||||||||||||||||||||||| |||| |||||||||| || |||||||||||||||    
T  33958300 aactcccttcctaaaaagagtggcactatgcttaaggagtgtgaagtgaaattggcc-atgtaactaggaaag 33958371  T

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Target: chr1; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 33886133 - 33886074
Alignment:
Q  1 gttttagagttgatctttgttctcatttctttctcctgcaagactcactatgtttctatc 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  33886133 gttttagagttgatctttgttctcatttctttctcctgcaagactctctatgtttctatc 33886074  T

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Target: chr1; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 33958119 - 33958178
Alignment:
Q  1 gttttagagttgatctttgttctcatttctttctcctgcaagactcactatgtttctatc 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  33958119 gttttagagttgatctttgttctcatttctttctcctgcaagactctctatgtttctatc 33958178  T

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Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 65 - 192
Target Start/End: Original strand, 41314476 - 41314605
Alignment:
Q  65 ttcttcaaagtgtagaatcagtaaagg--gtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttc 162  Q
    ||||||||||||||||||||| ||| |  |||| | ||| ||| | |  ||||||| ||||||||||| | |||||||||| ||||||||||||| ||||    
T  41314476 ttcttcaaagtgtagaatcagcaaaagtggtgactaaatagaagagaagaggtaactgattgttattattagtgaaataactctcccactaactctcttc 41314575  T
Q  163 ctaaaagagtggcactatgcttaaggaatg 192  Q
    ||| | |||||||||||| ||| |||||||    
T  41314576 ctagatgagtggcactatacttgaggaatg 41314605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 69 - 189
Target Start/End: Complemental strand, 14097600 - 14097475
Alignment:
Q  69 tcaaagtgtagaatcagtaaag-ggtgaatgaatg----gaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttcc 163  Q
    ||||||||||||||||||| || ||||||||||||    |||||||  ||||||||||||||||||||| |||| |||| ||| || ||||||||||||     
T  14097600 tcaaagtgtagaatcagtagagtggtgaatgaatgaatagaataaatgaggtaaccgattgttattaatagtgagataaaccttcctctaactcccttct 14097501  T
Q  164 taaaagagtggcactatgcttaagga 189  Q
    || | ||||||| |||| | ||||||    
T  14097500 tagatgagtggctctatacctaagga 14097475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 53 - 224
Target Start/End: Original strand, 11993047 - 11993217
Alignment:
Q  53 tttctatctattttcttcaaagtgtagaatcagtaaag-ggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccac 151  Q
    ||||| ||||||||||| ||||||||||| |||||||| |||||||||| |||| |||| ||||||| |||||||||||||  |||||||||| ||||||    
T  11993047 tttctctctattttctttaaagtgtagaaccagtaaagtggtgaatgaaaggaacaaaggaggtaactgattgttattaataatgaaataacc-tcccac 11993145  T
Q  152 taactcccttcctaaaagagtggcactatgcttaaggaatgtgcagtgaaattgaccaatgtaactaggaaag 224  Q
    |||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||| |||||||||||||||    
T  11993146 taactcccttcctaaaagagtggcactaggcttaaggagtgtgaagtgaaattgacc-atgtaactaggaaag 11993217  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 65 - 192
Target Start/End: Complemental strand, 2187003 - 2186875
Alignment:
Q  65 ttcttcaaagtgtagaatcagtaaag-ggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttcc 163  Q
    ||||||||||||||||||||| |||| ||||| | ||| ||| | |  ||||||| ||||||||||| | |||||||||| ||||||||||||| |||||    
T  2187003 ttcttcaaagtgtagaatcagcaaagtggtgactaaatagaagagaagaggtaactgattgttattattagtgaaataactctcccactaactctcttcc 2186904  T
Q  164 taaaagagtggcactatgcttaaggaatg 192  Q
    || | |||||||||||| ||| |||||||    
T  2186903 tagatgagtggcactatacttgaggaatg 2186875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 192
Target Start/End: Original strand, 19633140 - 19633266
Alignment:
Q  67 cttcaaagtgtagaatcagtaaag-ggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttccta 165  Q
    ||||||||||||||||||| |||| ||||| | ||| ||| | |  ||||||| ||||||| ||| | || ||||||| ||||||||||||| |||||||    
T  19633140 cttcaaagtgtagaatcagcaaagtggtgactaaatagaagagaagaggtaactgattgttgttattagttaaataactctcccactaactctcttccta 19633239  T
Q  166 aaagagtggcactatgcttaaggaatg 192  Q
     | |||||||||||| ||| |||||||    
T  19633240 gatgagtggcactatacttgaggaatg 19633266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 192
Target Start/End: Original strand, 1609045 - 1609172
Alignment:
Q  65 ttcttcaaagtgtagaatcagtaaag-ggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttcc 163  Q
    ||||||||||||||||||||| |||| ||||| | ||| ||| | |  ||||||| ||||||| ||| || |||||||||  |||||||||||| |||||    
T  1609045 ttcttcaaagtgtagaatcagcaaagtggtgactaaatagaagagaagaggtaactgattgttgtta-ttatgaaataactatcccactaactctcttcc 1609143  T
Q  164 taaaagagtggcactatgcttaaggaatg 192  Q
    || | |||||||||||| ||| |||||||    
T  1609144 tagatgagtggcactatacttgaggaatg 1609172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 134 - 224
Target Start/End: Original strand, 48189040 - 48189127
Alignment:
Q  134 gtgaaataaccctcccactaactcccttcctaaaagagtggcactatgcttaaggaatgtgcagtgaaattgaccaatgtaactaggaaag 224  Q
    ||||||||||| |||||||||| ||||||||||| | ||||||||||||||||| | ||   ||||||||||||| |||||||||||||||    
T  48189040 gtgaaataacc-tcccactaac-cccttcctaaatgggtggcactatgcttaagaagtggaaagtgaaattgacc-atgtaactaggaaag 48189127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 224
Target Start/End: Original strand, 21270164 - 21270250
Alignment:
Q  135 tgaaataaccctcccactaactcccttcctaaaagagtggcactatgcttaaggaatgtgcagtgaaattgaccaatgtaactaggaaag 224  Q
    |||||||||| |||||||||| ||||||||||| ||||||||||||||||||| | ||   ||||||| ||||| |||||||||||||||    
T  21270164 tgaaataacc-tcccactaac-cccttcctaaatgagtggcactatgcttaagaagtggaaagtgaaactgacc-atgtaactaggaaag 21270250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 65 - 192
Target Start/End: Original strand, 37627611 - 37627740
Alignment:
Q  65 ttcttcaaagtgtagaatcagtaaagg--gtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttc 162  Q
    ||||||||||||||||||||| ||| |  |||| | ||| ||| | |  ||||||| ||||||||||| | |||||||||| ||||||||||||| ||||    
T  37627611 ttcttcaaagtgtagaatcagcaaaagtggtgactaaatagaagagaagaggtaactgattgttattattagtgaaataactctcccactaactctcttc 37627710  T
Q  163 ctaaaagagtggcactatgcttaaggaatg 192  Q
    ||| | |||||||||||| ||| |||||||    
T  37627711 ctagatgagtggcactatacttgaggaatg 37627740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 65 - 192
Target Start/End: Original strand, 37806734 - 37806863
Alignment:
Q  65 ttcttcaaagtgtagaatcagtaaagg--gtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttc 162  Q
    ||||||||||||||||||||| ||| |  |||| | ||| ||| | |  ||||||| ||||||||||| | |||||||||| ||||||||||||| ||||    
T  37806734 ttcttcaaagtgtagaatcagcaaaagtggtgactaaatagaagagaagaggtaactgattgttattattagtgaaataactctcccactaactctcttc 37806833  T
Q  163 ctaaaagagtggcactatgcttaaggaatg 192  Q
    ||| | |||||||||||| ||| |||||||    
T  37806834 ctagatgagtggcactatacttgaggaatg 37806863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 132
Target Start/End: Original strand, 14276864 - 14276942
Alignment:
Q  52 gtttctatctattttcttcaaagtgtagaatcagtaaag-ggtgaatgaatggaataaagaaggtaaccgattgttattaat 132  Q
    |||||| || |||||||||||||||||   ||||||||| |||||||||||||||||||| ||||||||||||| |||||||    
T  14276864 gtttctctccattttcttcaaagtgta---tcagtaaagtggtgaatgaatggaataaaggaggtaaccgattgctattaat 14276942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 2963 - 3000
Alignment:
Q  148 ccactaactcccttcctaaaagagtggcactatgctta 185  Q
    |||||||||||||||||||||||||| |||||||||||    
T  2963 ccactaactcccttcctaaaagagtgacactatgctta 3000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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